Thermomonas brevis: H9L17_13615
Help
Entry
H9L17_13615 CDS
T06816
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tbv
Thermomonas brevis
Pathway
tbv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H9L17_13615 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbv03400
]
H9L17_13615 (ligD)
Enzymes [BR:
tbv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H9L17_13615 (ligD)
DNA repair and recombination proteins [BR:
tbv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H9L17_13615 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QNN46196
UniProt:
A0A7G9QS71
LinkDB
All DBs
Position
2934351..2936864
Genome browser
AA seq
837 aa
AA seq
DB search
MSLVDYRRKREFSKTREPAPGRAAAHGKRAIFVVQLHHASRRHYDFRLQVGNVLKSWAVP
KGPSYDPAVKRMAVEVEDHPLAYAGFEGEIPKGQYGGGHVARFDQGYWSTEGDAEAQLAK
GHLRFELFGDKLKGGWHLVRSGKPGRQVQWLLFKDRDGHAGTLEADDLLGDVTKAPAEDV
KRAGAGKPAKARKTSAPPAKARRKRDWSKRALQLPGAKKARFRGGFFAPQLARLGDAPPQ
GPEWLHELKWDGYRLLVAVVDGKARLYSRNALDWTPKLPEIVAAVEALKLDSAALDGELI
AGRGTKDDFNLLQATLAGEKNASLSLVLFDLLHLDGVDVSAAPLAARKALLEAVLGTPPP
HLAYSSHIAGEGERAWQLAREQGFEGIVSKRADRAHHTGRSPEWRKTKHVLADEFAVVGY
TAPKGSRVGIGALLLAAPEGRGWRYVGRMGSGFGDALLLQLAKRLGEGRREPTARVDVPD
PELRRARWVAPEIVVEAFYRGIGGNGLLRQASLKAVRSDKSASDLRDSDRAPARAASEGR
AMNATEAADDIAITHPERVVFPEDGIRKQDIADYYRAMARWLLPEIAGRPLSIVRCPQGA
GRPCFFQKHHGAGMRHVDSVRLREESGEQEDYLVVRDEAALMELVQFNALEFHPWGAKAD
APELADRLVFDLDPGPDVPWKEVVAAARTVRARLAELHLESWLRTSGGKGLHVVVPLRPA
CPWEQAKAFAHGFADALAASEPLKFLATASKRLRKGRIFVDYLRNGRGATSVASFSLRAR
PGAPVAMPLRWEELGRLKSAAQFTLRNAPARMRRLRAHPWEGIDKVKQDLSWLDARS
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctcgtcgactaccggcgcaagcgcgagttctcgaagacgcgggaacccgcgccc
ggtcgcgccgccgcgcacggcaagcgcgcgatcttcgtggtgcagctgcaccacgcctcg
cgccgccactacgacttccgcctgcaggtcggcaacgtgctcaagagctgggcggtgccg
aaggggccgagctacgacccggcggtcaagcggatggcggtggaggtcgaagaccatccg
ctggcctatgccggcttcgagggcgagatcccgaaaggccagtacggcggcggccacgtc
gcgcgcttcgaccagggctactggtccaccgagggcgacgccgaggcgcaattggccaag
ggccatctgcgcttcgagctgttcggcgacaagctcaagggcggctggcatctggtgcgt
tccggcaagccgggccggcaggtgcagtggctgctgttcaaggaccgcgacggccatgcc
ggcacgctggaggcggacgatctgctcggcgacgtcaccaaggcgccggccgaagacgtc
aagcgcgccggcgcgggcaagccggcgaaggcgcgcaagacgtccgcgccgccggccaag
gcccggcgcaagcgcgactggtcgaagcgcgcgctgcaactgccgggcgcgaagaaagcg
cgcttccgcggcggcttcttcgccccgcaattggcgcgcctcggcgacgcgccgccgcag
ggcccggagtggctgcacgagctcaagtgggacggctaccgcctgctggtcgcggtggtc
gacggcaaggcgcggctgtattcgcgcaacgcgctggactggacgccgaagctgccggag
atcgtggccgcggtcgaggcgctgaagctggacagcgccgcgctcgatggcgaactgatc
gccggccgcggcaccaaggacgacttcaacctgctgcaggcgactctggccggcgagaag
aacgccagcctgtcgctggtgctgttcgacctgctgcacctggatggcgtggacgtgtcc
gccgcgccgctggccgcgcgcaaggcgctgctggaagccgtgctgggcacgccgccgccg
cacctggcatacagctcgcacatcgcaggcgagggcgagcgcgcctggcagctggcgcgc
gagcagggcttcgagggcatcgtgtccaagcgcgccgaccgcgcccatcacacgggccgt
tcgccggaatggcgcaagaccaagcatgtgctcgccgacgaattcgcggtggtcggctac
accgcgccgaagggcagccgcgtcggcatcggcgcgctgctgctggcggcgccggagggg
cgcggctggcgctacgtcgggcggatgggcagcggcttcggcgatgcgctgctgctgcag
ctcgcgaagcgattgggcgaaggccggcgcgagccgaccgcgcgggtggacgtgcccgac
ccggagctgcgccgcgcgcgctgggtcgcgccggagatcgtggtcgaggcgttctaccgc
ggcatcggcggcaacgggctgctgcggcaggcgtcgctgaaggcggtacgctccgacaaa
tccgcgtccgacctgcgcgacagcgaccgcgcgccggcacgcgccgcaagcgagggcagg
gccatgaacgcgacggaagcggcggacgacatcgccatcacccatccggagcgggtggtg
tttcccgaggacggcatccgcaagcaggacatcgccgactactaccgcgccatggcgcgc
tggctgttgccggagatcgccggccggccgctgtcgatcgtgcgctgcccgcagggcgcg
ggccggccctgcttcttccagaagcatcacggcgcggggatgcgccacgtggacagcgtc
cggctgcgcgaggaatccggcgagcaggaggactacctggtggtgcgcgacgaggccgca
ttgatggaactggtgcagttcaatgcgctggagttccatccctggggcgcgaaggcggac
gcgcccgagctggccgaccgcctcgtgttcgatctcgatcccggcccggacgtgccgtgg
aaggaggtggtcgcggcggcgcgcacggtgcgcgcgcggctggcggaactgcacctcgaa
agctggctgcgcacctccggcggcaagggcctgcacgtggtggtgccgctgcggccggcc
tgcccgtgggagcaggccaaggcgttcgcgcacggcttcgccgacgcgctggccgcctcg
gagccgctgaagttcctcgccaccgcgtccaagcggctgcgcaagggccggatcttcgtg
gactacctgcgcaacggccgcggcgcgaccagcgtggcctcgttctcgctgcgcgcgcgg
ccgggcgcgccggtggcgatgccgctgcgctgggaggagctggggcggttgaagagcgcg
gcgcagttcaccctgcgcaacgcgccggcgcggatgcggcggctgcgcgcgcatccgtgg
gaagggatcgacaaggtgaagcaggatctgtcctggctcgacgcgcgtagctga
DBGET
integrated database retrieval system