KEGG   Thermomonas brevis: H9L17_13615
Entry
H9L17_13615       CDS       T06816                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
tbv  Thermomonas brevis
Pathway
tbv03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tbv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H9L17_13615 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tbv03400]
    H9L17_13615 (ligD)
Enzymes [BR:tbv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H9L17_13615 (ligD)
DNA repair and recombination proteins [BR:tbv03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H9L17_13615 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QNN46196
UniProt: A0A7G9QS71
LinkDB
Position
2934351..2936864
AA seq 837 aa
MSLVDYRRKREFSKTREPAPGRAAAHGKRAIFVVQLHHASRRHYDFRLQVGNVLKSWAVP
KGPSYDPAVKRMAVEVEDHPLAYAGFEGEIPKGQYGGGHVARFDQGYWSTEGDAEAQLAK
GHLRFELFGDKLKGGWHLVRSGKPGRQVQWLLFKDRDGHAGTLEADDLLGDVTKAPAEDV
KRAGAGKPAKARKTSAPPAKARRKRDWSKRALQLPGAKKARFRGGFFAPQLARLGDAPPQ
GPEWLHELKWDGYRLLVAVVDGKARLYSRNALDWTPKLPEIVAAVEALKLDSAALDGELI
AGRGTKDDFNLLQATLAGEKNASLSLVLFDLLHLDGVDVSAAPLAARKALLEAVLGTPPP
HLAYSSHIAGEGERAWQLAREQGFEGIVSKRADRAHHTGRSPEWRKTKHVLADEFAVVGY
TAPKGSRVGIGALLLAAPEGRGWRYVGRMGSGFGDALLLQLAKRLGEGRREPTARVDVPD
PELRRARWVAPEIVVEAFYRGIGGNGLLRQASLKAVRSDKSASDLRDSDRAPARAASEGR
AMNATEAADDIAITHPERVVFPEDGIRKQDIADYYRAMARWLLPEIAGRPLSIVRCPQGA
GRPCFFQKHHGAGMRHVDSVRLREESGEQEDYLVVRDEAALMELVQFNALEFHPWGAKAD
APELADRLVFDLDPGPDVPWKEVVAAARTVRARLAELHLESWLRTSGGKGLHVVVPLRPA
CPWEQAKAFAHGFADALAASEPLKFLATASKRLRKGRIFVDYLRNGRGATSVASFSLRAR
PGAPVAMPLRWEELGRLKSAAQFTLRNAPARMRRLRAHPWEGIDKVKQDLSWLDARS
NT seq 2514 nt   +upstreamnt  +downstreamnt
gtgagcctcgtcgactaccggcgcaagcgcgagttctcgaagacgcgggaacccgcgccc
ggtcgcgccgccgcgcacggcaagcgcgcgatcttcgtggtgcagctgcaccacgcctcg
cgccgccactacgacttccgcctgcaggtcggcaacgtgctcaagagctgggcggtgccg
aaggggccgagctacgacccggcggtcaagcggatggcggtggaggtcgaagaccatccg
ctggcctatgccggcttcgagggcgagatcccgaaaggccagtacggcggcggccacgtc
gcgcgcttcgaccagggctactggtccaccgagggcgacgccgaggcgcaattggccaag
ggccatctgcgcttcgagctgttcggcgacaagctcaagggcggctggcatctggtgcgt
tccggcaagccgggccggcaggtgcagtggctgctgttcaaggaccgcgacggccatgcc
ggcacgctggaggcggacgatctgctcggcgacgtcaccaaggcgccggccgaagacgtc
aagcgcgccggcgcgggcaagccggcgaaggcgcgcaagacgtccgcgccgccggccaag
gcccggcgcaagcgcgactggtcgaagcgcgcgctgcaactgccgggcgcgaagaaagcg
cgcttccgcggcggcttcttcgccccgcaattggcgcgcctcggcgacgcgccgccgcag
ggcccggagtggctgcacgagctcaagtgggacggctaccgcctgctggtcgcggtggtc
gacggcaaggcgcggctgtattcgcgcaacgcgctggactggacgccgaagctgccggag
atcgtggccgcggtcgaggcgctgaagctggacagcgccgcgctcgatggcgaactgatc
gccggccgcggcaccaaggacgacttcaacctgctgcaggcgactctggccggcgagaag
aacgccagcctgtcgctggtgctgttcgacctgctgcacctggatggcgtggacgtgtcc
gccgcgccgctggccgcgcgcaaggcgctgctggaagccgtgctgggcacgccgccgccg
cacctggcatacagctcgcacatcgcaggcgagggcgagcgcgcctggcagctggcgcgc
gagcagggcttcgagggcatcgtgtccaagcgcgccgaccgcgcccatcacacgggccgt
tcgccggaatggcgcaagaccaagcatgtgctcgccgacgaattcgcggtggtcggctac
accgcgccgaagggcagccgcgtcggcatcggcgcgctgctgctggcggcgccggagggg
cgcggctggcgctacgtcgggcggatgggcagcggcttcggcgatgcgctgctgctgcag
ctcgcgaagcgattgggcgaaggccggcgcgagccgaccgcgcgggtggacgtgcccgac
ccggagctgcgccgcgcgcgctgggtcgcgccggagatcgtggtcgaggcgttctaccgc
ggcatcggcggcaacgggctgctgcggcaggcgtcgctgaaggcggtacgctccgacaaa
tccgcgtccgacctgcgcgacagcgaccgcgcgccggcacgcgccgcaagcgagggcagg
gccatgaacgcgacggaagcggcggacgacatcgccatcacccatccggagcgggtggtg
tttcccgaggacggcatccgcaagcaggacatcgccgactactaccgcgccatggcgcgc
tggctgttgccggagatcgccggccggccgctgtcgatcgtgcgctgcccgcagggcgcg
ggccggccctgcttcttccagaagcatcacggcgcggggatgcgccacgtggacagcgtc
cggctgcgcgaggaatccggcgagcaggaggactacctggtggtgcgcgacgaggccgca
ttgatggaactggtgcagttcaatgcgctggagttccatccctggggcgcgaaggcggac
gcgcccgagctggccgaccgcctcgtgttcgatctcgatcccggcccggacgtgccgtgg
aaggaggtggtcgcggcggcgcgcacggtgcgcgcgcggctggcggaactgcacctcgaa
agctggctgcgcacctccggcggcaagggcctgcacgtggtggtgccgctgcggccggcc
tgcccgtgggagcaggccaaggcgttcgcgcacggcttcgccgacgcgctggccgcctcg
gagccgctgaagttcctcgccaccgcgtccaagcggctgcgcaagggccggatcttcgtg
gactacctgcgcaacggccgcggcgcgaccagcgtggcctcgttctcgctgcgcgcgcgg
ccgggcgcgccggtggcgatgccgctgcgctgggaggagctggggcggttgaagagcgcg
gcgcagttcaccctgcgcaacgcgccggcgcggatgcggcggctgcgcgcgcatccgtgg
gaagggatcgacaaggtgaagcaggatctgtcctggctcgacgcgcgtagctga

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