Trueperella bialowiezensis: NCTC13354_00715
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Entry
NCTC13354_00715 CDS
T05959
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tbw
Trueperella bialowiezensis
Pathway
tbw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13354_00715 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbw03400
]
NCTC13354_00715 (mfd)
Enzymes [BR:
tbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13354_00715 (mfd)
DNA repair and recombination proteins [BR:
tbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC13354_00715 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
VEI13016
UniProt:
A0A448PDK4
LinkDB
All DBs
Position
1:complement(761843..765415)
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AA seq
1190 aa
AA seq
DB search
MDLRPVLNILRDDAGASIAPYAADRFGDFAMPRGAFAPVIAELVRGSETGEAGAHTAEPG
SGKHPRGLQVVVTTSGSEAEDLRSALRAYIPAENMALFPAWETLPHERLSPRADTVAERL
TTLRRLAHPEEFVPLKVLLVPLRAFLQPIAAGLGELEPVTLKVGDVVDFEQVQERLVRAA
YTRVDMIESRGQFAVRGGIIDIFPPTADHPLRVEFFGDEVDEIRSFAVADQRSMDNVDEL
YAPPCREILLTDDVRSRASKAIEDLPGAEEMLAKIANGIAVEGMESLQPVLVDKMHLLVD
ELPAGARIIMAEPERLAQRAESLHETTQEFLAAAWSAAAAGGQIPISVSSASFEEIDDVE
RAATGRGLGWWTIGGFAGADSVRLALREPQNFAGNVDAALRQVGKLAREQWRVVVAVEGA
GLGRRIVDQLGDVDVPARFSEDLGEVTPGVVSVVTAPVQSGFVAEGSKFALLGSNDLVGR
KRARSAQQRQMPKRRKNAVDPLQLKPGDYVVHARHGVAQFVQLAKRRLGGPNGAQRDYVV
LEYAPSKRGGARDQLWVPTDQLDQISKYSGGDSPTLNKMGGADWAKTKAKARAAVKQIAK
ELVRLYAQRRATKGHAFSPDTPWQRELEDAFEHVETPDQLATIEEVKRDMEAPEPMDRLI
SGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLVGQHVETFKERYAGFPVNVAQLSRF
QTDREADEVKKGLRDGSVDVVIGTHKLITGDVRFKDLGLVVIDEEQRFGVEHKETLKQLY
PAVDVLSMSATPIPRTLEMAVTGLRQMSTLATPPEERHPILTYVGVHESQQVAAAIKREL
LRDGQVFYVHNRTQSINRVAAELQELVPDARIGVAHGKMSEYQLELIIDQFWNKEIDVLV
STTIIETGLDISNANTLIVENAHKLGLSQLHQLRGRVGRGRDRAYAYFLYPRDGTMTETA
LERLRTIASNTELGAGFQVALKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMISEAVANI
TGQDERTDAEKAGEIRIEIPVEAYVPETWVTSERLRLEIYTKIAATTSEPQRADVRAELV
DRYGPVPVEVDRLFELARLREKAGRAGIEEITMQGRNVRFAPVVLPDSRQARLRRLYPKA
IAKPAIRTLLVPTPVADPRKLGAQKPIDNEEMVEFVNQVIDSVFLASIGS
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggatctgcgcccagttctcaacattcttcgggacgacgccggagcgtccatcgccccg
tatgccgccgatcgtttcggcgacttcgccatgccacgtggcgccttcgcgcctgttatt
gccgagctggttcgcggctccgagacgggcgaagccggtgcccacacggccgagcccggc
agcggcaaacatccccgcggcctgcaggtggtggtgacgacgtcgggcagcgaagccgaa
gacctgcgctcggcgctgcgtgcctacattccggcagagaatatggcgttgttccccgcg
tgggaaaccctcccgcatgagcggctctctccgcgcgccgacaccgtggctgagcggcta
accacgctacgccggctcgcacacccagaggagtttgtgccgctcaaggtgttgctcgtg
ccgcttcgcgcattcttgcagccgatcgcggcagggctcggggaactggagccggtgacg
ctcaaggtgggcgacgtcgtcgacttcgagcaggtgcaagaacgcctcgtgcgggctgca
tacacgcgggttgacatgatcgaaagccgcgggcagttcgccgtgcgcggcggaatcatt
gacatctttccgcccaccgccgaccacccgctgcgcgtggagttcttcggcgacgaagtt
gacgaaatccgttcgttcgccgtcgcagaccagcgctcgatggacaacgtcgacgaacta
tacgcgccgccatgccgggaaatcctgcttacggacgacgtgcgctcgcgagcctcgaaa
gcgatcgaggacctgccgggcgcggaggagatgctggccaagatcgcgaacgggatcgcg
gtggagggcatggaatccctgcagccggtgctcgtggacaagatgcacttgctggtcgac
gagttacccgccggggcacggatcatcatggccgagccggagcgcctcgcccagcgggcc
gagtccttgcatgaaaccacgcaggagtttttggcggcggcatggtcggcggcggctgcg
ggcgggcagatcccgatctcggtgtcgagtgcgtcgtttgaggagatcgacgacgtcgaa
cgcgcggccaccgggcgcgggctcggctggtggacgattggcggattcgcgggcgccgat
tcggtgcgcctggcgttgcgagagccgcagaattttgcgggcaatgtggatgcggccttg
cgccaggtgggcaagctggctcgtgagcagtggcgcgtggtcgtggccgtggagggcgcc
gggctgggacggcgtatcgtcgaccagctgggtgacgtggacgttcccgcccggttcagc
gaggatctgggcgaagtgacccccggcgtcgtcagcgtggtgacggctcccgtgcagtcg
ggcttcgttgctgaaggttccaagttcgcgcttctgggcagtaacgacctggtggggcgt
aagcgggcgcgctcggcgcagcagcgccagatgcctaagcggcgtaagaacgccgtcgac
ccgctccagctcaagccgggcgactatgtggtgcacgcacgccacggcgtcgctcaattc
gtgcaactggccaagcggcggctgggcgggccgaacggggcgcaacgcgactacgtagtg
ctcgaatacgcgccgtccaagcggggcggggcgcgcgatcagctgtgggtgcccaccgac
cagctcgaccagatctccaaatattccggcggcgattctccgacgctcaacaagatgggc
ggggctgattgggctaagacgaaggcgaaggcgcgggcggccgtcaagcagatcgcgaag
gagctcgtgcggctgtatgcgcagcgccgggccacgaaggggcacgcgttttcgcccgat
acgccgtggcagcgcgagcttgaggacgccttcgagcacgtggaaactccggatcagttg
gcgacgatcgaagaggtcaagcgggacatggaggccccggagccgatggatcggctgatt
tccggcgacgtcggctacggcaaaaccgagatcgcggtgagggccgcgttcaaggccgtg
caggacggcaagcaggtggccgtgctagcgccgaccacgctgctcgttgggcagcacgtg
gagaccttcaaggagcgctacgcgggcttcccggtgaacgtggcgcaactgtcgcgtttc
cagaccgatcgcgaggccgacgaggtgaagaaggggctgcgcgacgggagcgtcgacgtc
gtcatcggcacgcacaagctcatcacgggtgacgtgcggtttaaggacctcgggctcgtt
gtgattgacgaggagcagcgcttcggcgtcgaacataaggaaacactcaaacagttgtat
ccggcggtggacgtgctgtccatgtccgcaacgccgatcccgcgtacgctcgaaatggcc
gtgaccggcctgcggcagatgtcgacgctggctaccccgcccgaggaacgccacccgatt
ttgacgtacgtgggcgtgcacgaatcccagcaggtggcggccgcgatcaagcgcgagctg
ctgcgcgacgggcaggtgttctacgtgcacaaccgtacccagtcgatcaaccgggtggcg
gcggagctacaggagctggtgccggacgcgcggatcggcgtcgcccacggcaagatgagc
gaataccagctcgagctcatcatcgaccagttctggaacaaagagatcgacgtgctcgtg
tccaccacgatcatcgaaaccgggctcgacatttcgaatgcgaacacgctgatcgtggag
aacgcgcacaagctcggcctgtcgcagctccaccagttgcgcgggcgcgtgggccgcggg
cgggatcgtgcttatgcctacttcttgtatccgcgtgatgggacgatgacggagacggcc
ctggagcgcctgcgcacgatcgcctccaacacggagctgggcgcaggtttccaggtggcg
ctcaaggatctggagatccgcggggctggcaacctgttgggcggcgaacagtccgggcat
atcgccggagttggcttcgacctctacattcggatgatttccgaggcggttgcgaacatt
accgggcaggacgagcgtacggacgccgagaaggcgggcgagatccggatcgagatcccg
gtggaagcttacgtgccggagacgtgggtgacgtcggagcggctgcggctggagatttac
acgaagattgcggcgacgacgtcggaaccccagcgggccgacgtgcgggcggaactcgtg
gaccggtacggaccggtgcccgtggaagtggaccggctgttcgagctggcacgcctgcgg
gaaaaggccgggcgggcagggatcgaggagatcaccatgcaggggcgcaacgtgcggttc
gcgccggtggtgctgccggattcgcggcaggcccggctgcgccgactctatccgaaggcg
attgcgaagccggcgatccggacgttgctcgtgccgacgcccgtcgctgatccacgcaag
ctcggcgcacaaaaaccgatcgacaacgaagagatggtcgagttcgtcaaccaggtgatc
gactcggtgttccttgcttctatcggtagttag
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integrated database retrieval system
