Tribolium castaneum (red flour beetle): 657043
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Entry
657043 CDS
T01046
Symbol
Lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tca
Tribolium castaneum (red flour beetle)
Pathway
tca03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
657043 (Lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tca03400
]
657043 (Lig4)
Enzymes [BR:
tca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
657043 (Lig4)
DNA repair and recombination proteins [BR:
tca03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
657043 (Lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_IV
mRNA_cap_enzyme
Flagellin_IN
Motif
Other DBs
NCBI-GeneID:
657043
NCBI-ProteinID:
XP_968624
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All DBs
Position
LG9:complement(204343..206614)
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AA seq
734 aa
AA seq
DB search
LSISAINDFLDQIANRSSDSGLDDLVLQFLLKLSPRNIKWLILIILKDLKLGFGDNSILN
CFHPDGADFFATNSNLRNFCDLIRDPQVRLNELEINVFQAFRPMLSKRCDAANFKKCFPE
SKTFIIENKFDGERFQLHMADGQFRYFSRNGFDYTDTYGASFTAGIFTPKLRPVLGPETK
RVILDGEMMLWNRETRSFGSKGMNLDVKKLGEGGKYQPCFCVFDILLHNDRVLTNQPLFK
RLKCLKSVVKNPVEGTIVVSQYSEASSLGDIVDALNSSVDNNEEGIVVKDTKSVYKCSDR
NSGWFKVKMEYFDDVVHDLDVILMGGCYSSGKLNSFFVGVSSGANTYLSFGRISSGLSDE
QLDLLAEKFQSKGVDFKSFSTESEGKLQFGRDRPDLYIEPHNSCILQIRATELIRTTNDT
VKCPYTLRFPRVLKIRDDKPVDECFSINELLELAGQNKPVIKLNKRHIELSEISAKARPA
KKIKLEVIKSDLLTESGDFLTGKRFYVDSGTQKWGLDDIYHAIKKAGGEISYRVEPNVDV
ILVSKVGKKVAELMKQPNHFDIVHVDWLHRVMEYRELVDYKPGEMFYKGTNFRRDVGSDS
DRFGDSFREEATKESLKCAVRVMQEAGVFLNTNGAVFCGDKPSFGDYVAYFDCFEEINNP
RSKRIYYSLPDEAEFEFYSGTVVKEITAQVNLIIIAENNEDRVSIVSDFLANEGLGTVDI
VSKDFLYSRISSQN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
ctgagcattagcgccataaacgacttcctggaccaaatcgcaaaccggtccagcgattcg
ggcttggacgacctcgtcttgcaattcctcctcaaactatcgccacgcaacataaagtgg
ctcattctcatcatcctcaaagacctcaaactcggctttggcgacaactcgatcttgaac
tgcttccacccggacggggccgattttttcgccacgaacagcaacttgaggaacttctgc
gaccttattcgcgacccccaagtcaggctgaacgagctggagataaatgttttccaggcg
ttcagaccgatgctttcaaaacggtgcgatgccgccaacttcaaaaagtgcttccccgag
tcgaaaactttcatcattgagaataagttcgatggtgaaaggtttcaactgcacatggct
gacggccagtttaggtatttctcgcggaacggtttcgattacactgacacgtacggggcg
tctttcaccgcggggattttcaccccgaagttgcgccctgttcttggccctgaaaccaaa
cgggtgattctggacggggagatgatgctctggaacagggaaacgcgcagtttcgggtcc
aaggggatgaacttggatgtgaaaaaattgggggagggcggaaaataccagccttgtttt
tgcgtctttgatattttgttgcacaacgaccgggttttgaccaatcagccgttgtttaag
cggttgaagtgcctcaaaagtgtggtcaaaaacccggtggaaggcactattgttgtgagt
caatacagtgaagccagttctttgggtgatatcgtcgatgctttgaattcgtcggttgat
aataacgaggaagggattgtagttaaagacaccaaatcggtttacaaatgcagcgaccgg
aacagcggttggtttaaggtcaaaatggaatacttcgacgatgttgttcacgatttggac
gtgattttgatggggggttgttacagttcgggcaaactcaattcgttttttgttggggtc
agttcaggggctaacacctacttgtcctttgggagaatctcgtccggtttgagtgacgag
cagctcgaccttttggccgaaaaatttcagtcgaaaggggttgatttcaagtcattttca
accgagagcgagggcaagctccagttcggccgtgaccgccctgacctttacatcgagccc
cacaattcgtgcattttgcaaatcagagccactgaattaatccggaccacgaatgacacg
gtcaagtgtccctacactttacgttttccccgtgttttgaaaatccgggacgacaaaccg
gtcgatgagtgcttctcaataaacgagctcctcgaactcgcgggccagaacaagcccgtt
atcaaactgaacaaaagacacatcgaactctctgaaataagcgccaaggcaagaccggcg
aaaaaaatcaagcttgaggtcatcaagtcggatttgttgaccgaatccggggatttttta
accggaaagcgcttttacgtcgattccgggacccagaagtgggggcttgatgacatctac
cacgcgatcaagaaagccgggggtgagataagctaccgcgtggaaccgaacgttgatgtg
attttggtgtcgaaagttggtaaaaaagtggccgagctgatgaaacaacccaatcatttt
gatatagtccacgttgattggctgcaccgcgttatggaataccgagagttggtggactac
aagccgggggagatgttctacaaagggactaattttcggagagacgttggctcagattcg
gatagatttggcgattcgttccgtgaggaagcgacgaaagagtcgctaaagtgtgcggta
cgggtgatgcaagaagcgggcgtttttttgaacacaaacggggcggttttttgcggcgat
aagccgagttttggtgattatgtcgcgtattttgattgtttcgaagagattaataatccg
cgttccaaacgcatttattattcgcttccagatgaagcggagtttgagttttatagtggt
actgtggttaaagagataacggcgcaagttaatttgataataattgcggaaaataacgag
gatcgtgtctcaattgttagtgattttttggcaaatgaaggactcgggacggttgatatt
gtttcgaaagatttcttgtacagtcgcatttctagtcaaaattaa
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