Tribolium castaneum (red flour beetle): 657210
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Entry
657210 CDS
T01046
Symbol
Lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tca
Tribolium castaneum (red flour beetle)
Pathway
tca03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
657210 (Lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tca03400
]
657210 (Lig4)
Enzymes [BR:
tca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
657210 (Lig4)
DNA repair and recombination proteins [BR:
tca03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
657210 (Lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
DNA_ligase_A_C
BRCT_2
BRCT
DNA_ligase_IV
mRNA_cap_enzyme
Flagellin_IN
Motif
Other DBs
NCBI-GeneID:
657210
NCBI-ProteinID:
XP_968774
UniProt:
D6X053
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All DBs
Position
LG9:4644472..4647182
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AA seq
847 aa
AA seq
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MNFSTLCDFLDSVRSAKGVPEKSKLTKTFVKSLRDQQQDLFSVLRLVVPKLDRERPSYRL
KESKIAKLIIKMLDLPNGGDKTVLQKGIAGTTVDFVDVIHSVLQKYIVNKEIGLSIRAIN
DFLDQIANRSSDSGLDDLVLQFLLKLSPRNIKWLILIILKDLKLGFGDNSILNCFHPDGA
DFFATNSNLRNFCDLIRDPQVRLNELEINVFQAFRPMLSKRCDAANFKKCFPESKTFIIE
NKFDGERFQLHMADGQFRYFSRNGFDYTDTYGASFTAGIFTPKLRPVLGPETKRVILDGE
MMLWNRETRSFGSKGMNLDVKKLGEGGKYQPCFCVFDILLHNDRVLTNQPLFKRLKCLKS
VVKNPVEGTIVVSQYSEASSLGDIVDALNSSVDNNEEGIVVKDTKSVYKCSDRNSGWFKV
KMEYFDDVVHDLDVILMGGCYSSGKLNSFFVGVSSGANTYLSFGRISSGLSDEQLDLLAE
KFQSKGVDFKSFSTESEGKLQFGRDRPDLYIEPHNSCILQIRATELIRTTNDTVKCPYTL
RFPRVLKIRDDKPVDECFSINELLELAGQNKPVIKLNKRHIELSEISAKARPAKKIKLEV
IKSDLLTESGDFLTGKRFYVDSGTQKWGLDDIYHAIKKAGGEVSYRVEPNVDVILVSKVG
KKVAELMKQPNHFDIVHVDWLHRVMEYRELVDYKPGEMFYKGANFRRDVGSDSDRFGDSF
REEATKESLKCAVRVMQEAGDFLNTNGAVFCGDKPSFGDYVAYFDCFEEINNPRSKRIYY
SLPDEAEFEFYSGTVVKEITAQVNLIIIAENNEDRVSIVSDFLANEGLGTVDIVSKDFLY
SRISSQN
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgaacttctccaccctttgtgatttcctggactccgtcaggagcgccaaaggcgtacca
gaaaaatccaaactaaccaaaaccttcgtcaaatctctccgtgatcagcagcaagaccta
ttttccgtgttaaggttagtcgtgccaaagttagaccgcgagcggccttcctaccgccta
aaagagtccaaaatcgccaaactaataatcaaaatgctagacctgcccaacgggggcgac
aagacggtgctacagaagggcatcgcgggcacaaccgtcgatttcgtcgacgtaattcac
tcagttttgcaaaaatacatcgtcaacaaagaaatcggtctgagcattcgcgccataaac
gacttcctggaccaaatcgcaaaccggtccagcgattcgggcttggacgacctcgtcttg
caattcctcctcaaactatcgccacgcaacataaagtggctcattctcatcattctcaaa
gacctcaaactcggctttggcgacaactcgatcttgaactgcttccacccggacggggcc
gattttttcgccacgaacagcaacttgaggaacttttgcgaccttattcgcgacccccaa
gtcaggctgaacgagctggagataaatgttttccaggcgtttagaccgatgctttcaaaa
cggtgcgacgccgccaacttcaaaaagtgcttccccgagtcgaaaactttcatcattgag
aataagttcgatggtgaaaggtttcaactgcacatggctgacggccagtttaggtatttc
tcgcggaacggtttcgattacactgacacgtacggggcgtctttcaccgcggggattttc
accccgaagttgcgccctgttcttggccctgaaaccaaacgggtgattctggacggggag
atgatgctctggaacagggaaacgcgcagtttcgggtccaaggggatgaacttggatgtg
aaaaaattgggggagggcggaaaataccaaccttgtttttgcgtctttgatattttgttg
cacaacgaccgggttttgaccaatcagccgctgtttaagcggctgaagtgcctcaaaagt
gtggtcaaaaacccggtggaaggcactattgttgtgagtcaatacagtgaagccagttct
ttgggtgatatcgtcgatgctttgaattcgtcggttgataataacgaggaagggattgta
gttaaagacaccaaatcggtttacaaatgcagcgaccggaacagcggttggtttaaggtc
aaaatggaatacttcgacgatgttgttcacgatttggacgtgattttgatggggggttgt
tacagttcgggcaaactcaattctttttttgttggggtcagttcaggggctaacacctac
ttgtcctttgggagaatctcgtccggtttgagtgacgagcagctcgaccttttggccgaa
aaatttcagtcgaaaggggttgatttcaagtcattttcaaccgagagcgagggcaagctc
cagttcggccgtgaccgccctgacctctacatcgagccccacaattcgtgcattttgcaa
atccgagccactgaattaatccggaccacgaatgacacggtcaagtgtccctacacttta
cgttttccccgtgttttgaaaatccgggacgacaaaccggtcgatgagtgcttctcaata
aacgagctcctcgaactcgcgggccagaacaagcccgttatcaaactgaacaaaagacac
atcgaactctctgaaataagcgccaaggcaagaccggcgaaaaaaatcaagcttgaggtc
atcaagtcggatttgttgaccgaatccggggattttttaaccggaaagcgcttttacgtc
gattccgggacccagaagtgggggcttgatgacatctaccacgcgatcaagaaagccggg
ggtgaggtaagctaccgcgtggaaccgaacgttgatgtgattttggtgtcgaaagttggt
aaaaaagtggccgagctgatgaaacaacccaatcattttgatatagtccacgttgattgg
ctgcaccgcgttatggaataccgggagttggtggactacaagccgggggagatgttctac
aaaggggctaattttcggagagacgttggctcagattcggatagatttggcgattcgttc
cgtgaggaagcgacgaaagagtcgctaaagtgtgcggtacgggtgatgcaagaagcgggc
gattttttgaatacaaacggggcggttttttgcggcgataagccgagttttggtgattat
gtcgcgtattttgattgtttcgaagagattaataatccgcgttccaaacgcatttattat
tcgcttccagatgaagcggagtttgagttttatagtggtactgtggttaaagagataacg
gcgcaagttaatttgataataattgcggaaaataacgaggatcgtgtctcaattgttagt
gattttttggcaaatgaaggactcgggacggttgatattgtgtcgaaagatttcttgtac
agtcgcatttctagtcaaaattaa
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