Trinickia caryophylli: U0034_28695
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Entry
U0034_28695 CDS
T09722
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
tcar
Trinickia caryophylli
Pathway
tcar01501
beta-Lactam resistance
tcar01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
U0034_28695
01503 Cationic antimicrobial peptide (CAMP) resistance
U0034_28695
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tcar02000
]
U0034_28695
01504 Antimicrobial resistance genes [BR:
tcar01504
]
U0034_28695
Transporters [BR:
tcar02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
U0034_28695
Antimicrobial resistance genes [BR:
tcar01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
U0034_28695
BRITE hierarchy
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF
Patched
Motif
Other DBs
NCBI-ProteinID:
WQE14637
LinkDB
All DBs
Position
2:2158781..2161963
Genome browser
AA seq
1060 aa
AA seq
DB search
MSEFFIKRPVFAWVIAIVVMLGGLLALRTLAVAQYPEIAPTTISVMASYPGADAQTIENS
VTRVIEQGMTGLDNLQYMSATSNSTGEVEVRLTFTQDANADVAQMQVQNKLQLVTSQLPQ
IVQASGLSVTKSSASFLMVIGFVSTDGRLSSADLDDYVASTLNDTIKRVPGVGNTQLFGS
PYAMRIWLDPTRLAHYALMPADIEASLRAQNTQVSAGQLGAQPARPGQQLNATVTARSRL
QTPEQFGNVIVKSGADGAIVRLRDVARVELGAENYTYSSRYNGMPASGLGINLAADANAI
TVARAVKASIHALSGTLPAGVKVFYPYDTTPFVTHSIKGVVKTLLEAVVLVFIVMLVFLR
SVRATLIPALAIPVVLLGTWGVLAAAGYSINTLTMFAMVLSIGLLIDDAIVVVENVERVM
AEEGLSPREATRKSMKEITGALVGIATVLSAVFVPMAFFSGATGVIYRQFSVTIVTSMLL
SVLVALILTPALCATLLRPREAHGGRRGLGRWFDSTFERGVAAYGTGVRGVLARGNRILI
AFVVSLGVLAWLFGRLPGSFLPVEDQGIVMTAVQLPTGALRDRTARVLDEVTRYYLSEER
DAVEGVMTIEGFGFSGSGQNVGLAFVRLKPFAERRAARLSAEAVAQRATAAFERITDAQV
YALLPPAIEEMGTSNGFDFYLEDSNGTGRDRLAAMRDRVLAAASRSPLLSNTRPAGQEAA
PQFVVDIDQEKASALGLSLHDVNTTLSVAWGGDYVNDFIDRGRVKKVYLQSVADFRMQPG
DIDHWFVRNGGGEMVPFSSFVRSRWALSPTQLERYNGRAAVQIQGEAAPGVSSGAAMREV
DRLVSQLPAGYRHEWTGLSWQERLSRDQATALYVMSALVVFLCLAALYESWSIPLAVMLA
APIGIAGAVLAALAFGQTNDIYFKVGLLTTIGLAAKNAILIVEFALEREAQGERAVDAAI
GAAIQRLRPILMTSLAFILGVAPLVLATGAGSGAQHSIGIGVMGGMIASTAVGALVIPLF
FVAVRMAFGGSPRASGHVGAGGGSGQDTPNDRKDDGGEAR
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaatttttcatcaagcggcccgtgttcgcatgggtcatcgcgatcgtcgtcatg
ctcggcgggctgctcgcactgcgcacgcttgccgtggcgcaatacccggaaatcgcgccc
accaccatatccgtcatggccagctatcccggtgcggatgcgcagacgatcgagaattcg
gtcacgcgcgtcatcgagcagggaatgacggggctcgacaacctgcagtacatgtcggcg
acctccaactcgacaggcgaggtcgaagtcaggttgaccttcacccaggacgccaatgct
gacgtggctcagatgcaggtgcaaaacaagctgcagctcgtcacctcgcaattgccgcag
atcgtacaggcctcgggcctctcggtgacgaaatcgtcggcgagcttcctgatggtgatc
gggttcgtatcgaccgatggccggctgtcttccgccgacctcgacgattacgtggcgagc
acgctcaacgacacgatcaagcgcgtgcccggcgtcggcaatacccagttgttcggctcg
ccatacgcgatgcggatctggctcgaccctacccggctggcgcactatgcgttgatgccg
gcggacatcgaagcgtcgctgagggcgcagaacacgcaggtgtcggccgggcagttgggc
gctcagccggcgcgcccggggcagcagctcaatgcgacggttaccgcgcgcagtcgcctg
cagacgccggaacagttcggcaacgtcatcgtgaagagcggggctgacggcgcgatcgtc
cgcctgcgcgatgtcgcacgggtcgagctcggcgcggagaactacacctacagctcgcgc
tacaacggcatgccggcttcgggcctcggcatcaacctcgcggccgatgcgaacgcgatc
accgtcgcccgggccgtcaaggcgtcgatccacgcgctttccggcacgctgcccgcaggg
gtgaaggtgttctacccgtacgatacgacgcccttcgtgacgcattcgatcaagggggtc
gtgaagacgctgctggaggccgtcgtcctggtcttcatcgtgatgctcgtgttcctgcgg
agcgtgcgtgccacgctgatcccggcactggcgattccggtggtgctgctcggcacgtgg
ggcgtgcttgcggccgccggctattcgatcaacaccctgacgatgttcgccatggtgctg
tccatcggactgctgatcgacgacgcgatcgtcgtcgtcgagaacgtcgagcgcgtcatg
gccgaagaaggcctctcgccgcgcgaggcgacgcgcaagtcgatgaaggagatcaccggg
gcgctcgtgggcatcgcgacggttctgtccgccgtgttcgtgccgatggcgttcttctcc
ggggccaccggcgtcatttatcggcagttctccgtcacgatcgtcacgtccatgctgctg
tcggtgctcgtcgcgctgattctcacccctgcgctgtgcgcaacgttgctgcggccgcgc
gaggcgcatggcgggcggcgcggcctcgggagatggttcgactccacgttcgagcgcggc
gtcgcggcttacggcaccggtgtgcggggcgtactggctcgcggcaatcgaatactcatc
gccttcgttgtctcccttggggtgcttgcctggttgttcggccgcctgcccggctccttc
ctgcccgtggaggaccagggaatcgtaatgaccgcggtgcagttgcccacgggcgcgctg
cgcgacaggacggcgcgcgtgctcgacgaggtgacgcgctactacctgagcgaggagcgc
gatgcggtcgagggcgtcatgacgatcgagggcttcggcttcagcgggtcgggacagaac
gtggggctcgcgttcgtgcggctgaagcccttcgccgaacggcgcgcggcgcgcctctcg
gcggaggccgtggcgcagcgtgcgacggcggctttcgagcggatcaccgatgcgcaggtg
tatgcgctgctgcctcccgcgatcgaggagatgggaacgtcgaacggtttcgacttctac
ctggaagacagcaacggcacggggcgtgaccggctcgccgccatgcgtgaccgcgtgctg
gccgccgcctcgcgcagcccgctgctaagcaacacgcggccggccggccaggaggccgca
ccccagttcgtcgtcgatatcgatcaggagaaggcgagtgcgctcgggctgagtctgcat
gacgtcaataccacgctgtcggtcgcgtggggaggtgattacgtcaacgacttcatcgat
cgcggccgtgtgaagaaggtttacctgcagtccgttgcggatttccggatgcagccgggc
gatatcgaccactggttcgtgcgcaacggaggcggcgagatggtgccgttctcgtcgttt
gtgcggagcagatgggcgctgagcccgacgcaactcgagcgctacaacggccgcgccgcg
gtgcagattcagggcgaggctgcgccgggcgtgagctccggtgcggccatgcgggaggtg
gaccgcctcgtctcgcaattgcccgccggataccgccacgaatggaccgggctgtcatgg
caggagcgactgtcgcgcgaccaggccaccgcgctctatgtgatgtcggcgctggtggtg
ttcctgtgtctcgcggcgctgtacgagagctggtcgatcccgctcgcggtgatgctcgcc
gcgccgatcggcatcgccggcgccgtattggccgcgctggcattcgggcagaccaacgac
atctatttcaaggtgggattgctgacgacgatcggcctggcggcgaagaacgcgattctc
atcgtcgagttcgcgctggagcgcgaggcgcagggcgagcgggccgtggatgcggccatc
ggggcagcgatacagcgcctgcgcccgattctcatgacatcgctggcgttcattctcggg
gttgcgccgctcgtgctcgcaacgggggcggggtcgggcgcgcagcactcgatcggtatt
ggcgtaatgggcggaatgattgcctcgacagccgtgggcgcgctcgtcattcccttgttt
ttcgtagcggtgcgcatggcgtttggcggttcgccgcgggcttcgggccatgtcggagca
gggggcgggtccgggcaggacacgccaaacgatcggaaggatgacgggggagaggcgcga
tga
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