Theobroma cacao (cacao): 18589404
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Entry
18589404 CDS
T02994
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
18589404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18589404
Enzymes [BR:
tcc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
18589404
DNA repair and recombination proteins [BR:
tcc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
18589404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
zf-MYND
Motif
Other DBs
NCBI-GeneID:
18589404
NCBI-ProteinID:
XP_017983367
LinkDB
All DBs
Position
9:16004762..16022801
Genome browser
AA seq
1195 aa
AA seq
DB search
MTEEIKLSVVVSLFSWIQKSKTSAKKRSKFRKFLDTFCKPSDYFSAMRLILPSLDRERGT
YGLKESVLAICLIDALGMSRDSPDALRLINWRKGGANTGANAGNFALVAAEVLQRRQGTA
SGGLTIKELNDLLDRLASAESRAEKTTVLSSLINKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKMVCEKLRDRSQRHKRQDIEVGKAVRPQLAMRVRDAAAAWK
KLHGKEVLVECKFDGDRIQIHKNGTEIHYYSRNFLDHSEYERGMSNIIAQNILVDRCILD
GEMLVWDTTLSRFAEFGSNQEIAKAAKDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERH
ELLQKVVKPLKGRLEILVPYGGLNAHRPPGEPCWSCLAYSVDDVERFFKETIENRDEGIV
LKDLGSKWEPSDRSGKWLKLKPEYIHAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADRP
DPNAYPRRFVSFCRVGTGLADDELEAVVNKLKPYFRKYEYPKKTQPSFYQVTNNSKERPD
VWIESPEKSIILSINSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLNVQSFVELVH
SSNGTTQKGTVQGDVQDGKSRHKEHTRKAEKKAVSIVPSHFIQTDTSSVKGETLIFTNLI
FYFVNVPTTYSLDSFHKIIVEHGGMFSMNLNKPVTHCVAAESKGFKYQAAKLHGEIIHYS
WVLDCCSQKMLLPLQPKYFLFLSESSKKKLQQEVDEYSDPYYWDLDLADIKQLLNNIQRS
ENANTIDYYRKKYCPKERWSSFHGCSVYFYCSAQSLKADWQVLLRLTLRRLKLEVLMGGG
KISKDLKHATHLVILSVPGLDVDFDSLIKSFSCAEKHLFWKKGLHVVGSQWLEDCLERGQ
KLQEDLYSLKLSEVEETNLLECELDQNLKEAIPDFNSVQNQVMPVSCESPIKQRGCKVHL
QESMPLVTPNYGNRKRRPAGKNAKKGKTVVSQCRRVPRRCGKMSVKINEDESEESGSDDK
TNVEEIEKGEGNTEGYGIVGRENSEIRRNQVAEDIELSCSAKPVELEAAENMSKEWSDKA
PEVEMCEPNNDQSCKKAEKYDLMELDQENCGAKSEKLEVMVDPVQAMLLDMIPSLGIKHV
EATNSFVENEKPPADNNAEIPVVEDDKLDADFIAPPVKKKKVSYKDVAGELLKDW
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggaaatcaagttgagcgtggtagtgagcctcttctcttggatccagaaaagc
aaaacatcagccaagaagcggtccaagtttcgaaaattcctagacaccttttgcaagcct
tccgactacttcagcgccatgcggcttatccttccgtcgctggacagagagcgtggcaca
tacggcctcaaggaatcggtgctcgccatctgcctcattgacgctcttggcatgtccagg
gactcccccgatgctctccgtcttatcaattggcgcaaaggtggtgcaaacaccggcgcc
aatgctggaaacttcgctcttgtcgccgctgaggttctgcagcgtaggcagggaacggct
tccggtggactcaccatcaaggaattgaatgacttgcttgatcgcttagcttctgctgaa
agcagggccgagaagacaacagtcctttcttctttgattaataagacaaatgcacaggaa
atgaagtggattatcatgataattctaaaagatctcaagttgggaattagtgaaaaaagc
atatttcacgaatttcatccagatgccgaagacttgtttaatgtcacatgtgacctaaaa
atggtttgtgagaagttgagggatcgtagtcaacgtcataagcgtcaggacattgaggtt
ggaaaggctgtgcgaccgcaactagctatgagagtccgtgatgcagctgctgcatggaaa
aagcttcatggtaaggaggtacttgttgagtgtaaatttgatggcgatcgcattcaaatc
cacaaaaatggaactgagatacactactactccaggaattttcttgatcactctgaatat
gagcgtgggatgtcaaacattattgcacaaaatattctggttgataggtgcatacttgat
ggagaaatgttagtttgggataccactttgagtcggtttgctgagtttggatcaaatcaa
gaaatagccaaggcagcaaaagatggccttgacagtgacagacagttatgctatgttgca
tttgatattctttatgttggagacactagtgtcattcaccagagcttgaaggaacggcat
gaacttcttcaaaaggtggtgaagcctttgaagggtcgtttagagattttagtgccttat
ggtggtcttaatgctcatcgccctcctggggagccttgttggtcatgtcttgcgtacagt
gtggatgatgtggagagatttttcaaagaaacgattgaaaatagggatgaaggtattgtg
ttaaaagaccttggttccaaatgggaaccaagtgatagaagtgggaagtggttgaagtta
aagcctgagtacattcatgctggttctgacttagatgttctcattattggaggatattat
ggctctggacgtcgaggaggggaggtagctcaattcttagttggcttagcagatcgtcca
gacccaaatgcttatcccaggcgatttgtatccttctgcagagttggtactgggctggct
gatgatgaattggaagctgttgtaaacaaattgaagccttattttaggaaatatgaatac
ccaaagaagacgcaacctagtttttatcaagttacaaataactcaaaagagagacctgat
gtttggattgaaagcccggagaaatcaatcattctttctatcaacagtgatatccggacc
ataaggtctgaggtatttgctgcaccatacagcctgagatttccacgtatcgatagagtg
agatatgacaagccttggcatgagtgccttaatgtgcaatcatttgtagaacttgtgcat
tcaagtaatggtaccactcagaaagggacagtacagggagatgtgcaagatggtaaatca
agacacaaggaacacactagaaaggcagagaaaaaggctgtctcaatcgttccttctcat
tttattcaaactgacacatctagtgtgaagggggaaaccttaatatttacaaatcttatt
ttttactttgttaatgtgcctacaacctattctcttgattcatttcacaaaattattgtg
gagcatgggggaatgttctcaatgaatttgaacaagccagttacccattgtgttgcggct
gaaagcaaagggtttaagtatcaggcagcaaagcttcatggagaaattatccattactct
tgggtcttggattgttgctcacaaaagatgcttcttcctttacagccaaagtactttctt
ttcctttctgaatcatcaaaaaagaagttacagcaagaagttgatgaatattctgaccct
tattattgggaccttgaccttgcagatatcaaacagctcttaaacaatatccaaaggtca
gaaaatgccaacacgattgactattatagaaagaagtactgtccaaaggagaggtggtca
agttttcatggctgctctgtttacttctactgttcagctcagtcattgaaagctgattgg
caagtcttgttgagactcacactgaggaggttaaagcttgaagttttaatgggtggtggc
aaaatcagcaaggatctcaagcatgctacccatttggtaatcctatcagtgccaggattg
gatgtggactttgattctcttattaagagtttttcttgtgcagagaaacatcttttctgg
aagaaggggttacatgttgtgggatctcagtggctggaggattgcttagagaggggacaa
aagttacaagaagacctatatagtttgaaactcagtgaagttgaagaaacaaacttgtta
gaatgtgaattagaccaaaatctgaaggaagccataccagatttcaacagtgttcaaaac
caggttatgcctgtttcttgtgaaagtccaataaaacagagaggctgcaaagttcacctg
caagaatcaatgccattggtcactcctaattatggcaacaggaaaagaagacctgctggc
aagaatgcaaagaaaggaaaaacagtggtaagccaatgtcgaagggtaccgagacgttgt
ggaaagatgtctgttaagataaatgaagatgaatcagaagaaagtggttctgacgacaaa
acaaatgtggaagagatagaaaagggtgaagggaatactgaaggctatggaatcgttggt
agggaaaattctgagattcgacgaaatcaagtagcagaagatatagaattatcatgcagc
gccaagccagttgaactggaggctgcagaaaatatgagtaaagagtggtctgataaagct
cccgaggttgagatgtgtgaaccaaataatgaccaaagctgcaagaaagctgagaagtac
gaccttatggaactggatcaagagaattgtggtgcgaagtcagaaaagctagaagttatg
gttgatccggttcaggccatgttactggacatgataccaagcctcgggatcaagcatgtt
gaagctacaaactcattcgttgagaatgaaaagccacctgcagataacaatgctgagatt
ccagtggtagaggatgataagctagatgcagattttattgcaccgccagtaaagaaaaag
aaagtaagttacaaggatgtcgctggagaactactcaaggattggtaa
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integrated database retrieval system
