Theobroma cacao (cacao): 18595984
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Entry
18595984 CDS
T02994
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03013
Nucleocytoplasmic transport
tcc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18595984
03015 mRNA surveillance pathway
18595984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18595984
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
18595984
mRNA cycle factors
P-body specific factors
18595984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
18595984
NCBI-ProteinID:
XP_017978862
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Position
6:complement(17856330..17864686)
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AA seq
523 aa
AA seq
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MKEPLRRTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLGKSSHKHQRYSRAYINF
KRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPKPGTKKDGREGTIFKDPDYLE
FLKLIAKPVDNLPSAEIQLERKEVELSGAPKETPVVTPLMEFVRQKRAAESGTQGPVTRR
KIGRKAGAASTGKSGSSSKRGSEKKKYILKDSVKGTHHKDKSKFFVASKQEDQPVPSVGK
EKRENGTVYGIDGPVTGITLTADSGKKKILLLKPKDQEAPHVPQGASEQQGSSSPVANSP
GSTAPKQSQRREAGGRLIRSILLSNEASQNQPLAGVKPQQKTQTMNLDNVKRPPRPANTR
LGMHGHVSNNEIPALKSDGDKKGASNDKFIKKGLHGSGSGSEKHEKRIRNKDRLDRGVWA
PLRGSDVSQASEERFSPSMSQSAQASSNSIEGEMKGDIPNGRSGRNVPSENGSNRHFDRR
SAAYNIKDDGSVISSESKSSKRGATGSGAHEKQIWVQKSSSGS
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaccgttgcgaagaacgaaggtggtgataaggcatctgccaccgtcagtcacc
caatcatttcttttctctcaaatcgacgatcgtttctctgatcgttacaattggttctcc
ttccgtctcggcaagtccagccataagcatcagaggtactctcgagcctatataaacttc
aagagacctgaagatgtttttgagttcgctgagttctttgatgggcatgtatttgttaat
gagaagggtactcaatttaaggccattgttgaatatgctccttcacagcgtgtcccaaag
cctggcactaaaaaggatggtcgtgaagggaccattttcaaagatcctgattatctggaa
ttcctcaaactgattgcaaaacctgttgacaatcttcctagtgctgagattcagttggaa
agaaaagaagtggagctatctggtgctccaaaagaaacccctgtcgttacaccattaatg
gaatttgtgcgtcagaaacgagctgctgagagtggaactcaggggccagttactagaaga
aagattggcagaaaagctggtgctgcatctacaggcaagtctggatcaagtagcaagcgt
ggctctgagaagaaaaagtatattctaaaagacagtgtaaaaggtacacatcacaaggac
aagtccaaattttttgtagcatccaagcaagaggatcagccagtgccttctgttgggaaa
gaaaaaagagagaatggaactgtctacggcattgatggtcctgtaactggaattacttta
actgctgattctgggaagaaaaagatcctgctcctaaaaccaaaagatcaagaagctcct
catgtcccacagggtgcatcagaacagcagggttcatcatctcctgtagcaaattcacct
ggttcaactgctccaaaacagagtcaaagacgtgaggctggtggaaggttgataaggagc
atacttttgagtaatgaagcaagccaaaatcaacctttagcaggagtcaagcctcagcag
aaaactcaaactatgaatttggacaatgtcaagagacctcctcgacctgctaatacacga
ttgggtatgcatggtcatgtctctaataatgaaatacctgcattgaaatctgatggtgat
aaaaaaggagcttcaaatgacaagtttatcaaaaagggactgcatggttcaggttctggg
agtgagaagcatgaaaaacgtataagaaataaggatagacttgatcgtggtgtatgggcc
cctcttcgaggttctgatgtttcacaagctagtgaggagcgcttctcaccctctatgtca
caatctgcacaggcctcttctaattccattgaaggagaaatgaaaggcgacatacctaat
ggaagaagcgggcgtaatgttccgtcagaaaatggttcaaatagacattttgatcggcgc
tcagcagcctataatataaaggatgatgggtctgtcatatcaagtgagagcaagtcttcc
aaaagaggtgctactggctctggagcccatgagaaacaaatttgggttcagaagtcatct
tcaggttcttag
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