Theobroma cacao (cacao): 18596870
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Entry
18596870 CDS
T02994
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03022
Basal transcription factors
tcc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18596870
09124 Replication and repair
03420 Nucleotide excision repair
18596870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18596870
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18596870
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
18596870
DNA repair and recombination proteins [BR:
tcc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
18596870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
18596870
NCBI-ProteinID:
XP_007025657
LinkDB
All DBs
Position
6:23921344..23926459
Genome browser
AA seq
451 aa
AA seq
DB search
MPQVKIIAKNFMDMVASLPAIKLDMLYRNQFICEAILRSMPPLAKKYVLQMLYIDVPVTA
KSLEEWVLADGSSKHKVAIDRLIQLRILEVIDRKKETIYKLNPTFQTNLRKHLIYGGILP
REPMPSNVTVRLPTSEELDAYAHEQWECFLLQLISSGQAEKPTNFSSSMMRIFQRGLLCQ
REKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTTGEA
YNMNTLTDDQRAMIKDLSDLGLVKLQQGRKDSWFIPTKLATNLSVSLTDSSSRKQGFVVV
ETNFRMYAYSSSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGIAAEQIITFLQ
QNAHPRVAEKLPSVPENVTDQIRLWETDLNRVEMTPAHFYDDFPSRDVFEAASDFARVHC
GLLWEDAKKMRMVVKAEVHMLMREQLRGQNK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgaagataatcgcgaagaatttcatggacatggtggcttcattgcctgcc
attaagctcgacatgctttatcgtaatcaattcatttgcgaagccattctcaggtcgatg
ccgcctcttgcaaagaaatatgtgttacagatgttgtacattgatgttccggtgacagcc
aagtcgttggaggagtgggtgcttgccgatggatcctctaagcacaaagttgccatcgat
cggttgattcagttaagaatattagaagtaatcgataggaagaaggaaaccatttacaag
ttaaatcccacatttcagactaacctccggaaacatttgatatatggagggattttgcca
agagaaccaatgccttcaaatgttactgtgagactccctacctcagaggaacttgatgcc
tatgcacatgaacaatgggagtgtttcttgctgcaacttataagttcaggacaagctgaa
aaaccaacaaatttcagctcttccatgatgagaatttttcagcgtggtcttttgtgtcag
agggagaaagaagctccaagattaactgagagtggtttccagtttttgctgatggataca
aatgctcagctttggtatattatcagagaatatatctccaattcagaggagcaaggtgta
gaccaagcagatttaattgcatttttgctagaacttagttttcataccactggtgaggca
tataatatgaatacactgacagatgaccagagagctatgatcaaggacctttcagacttg
ggattggtcaaacttcagcagggcaggaaagatagttggtttatacctactaaattggcc
accaatctttcagtgagcttaacagattcatcatcaaggaaacagggatttgttgttgtg
gaaacaaactttaggatgtacgcatactcgtcatctaagttacactgtgaaattttacgt
ctattttcaagggtagagtatcaacttccaaacctcatagttggtgcaataacgaaagag
agcctgtataatgcttttgaaaatggcattgcagctgagcagataattacattccttcag
cagaatgcacatcctcgagttgctgagaaattaccatctgtacctgaaaatgtcaccgac
cagataagattgtgggaaactgatttgaatagagttgagatgactcctgcgcatttttat
gatgactttccttcaagggacgtctttgaggctgcttctgactttgctcgcgtgcattgc
ggtttactatgggaggatgctaagaaaatgcgaatggttgtcaaggcagaggttcatatg
cttatgcgagagcagcttcgtggtcaaaacaagtag
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