Theobroma cacao (cacao): 18601161
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Entry
18601161 CDS
T02994
Name
(RefSeq) ATP-dependent DNA helicase At3g02060, chloroplastic
Organism
tcc
Theobroma cacao (cacao)
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CarD_TRCF_RID
TRCF
RecG_dom3_C
PHAX_RNA-bd
DUF3198
Motif
Other DBs
NCBI-GeneID:
18601161
NCBI-ProteinID:
XP_017975078
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Position
4:3322081..3330187
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AA seq
835 aa
AA seq
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MASLLPVPDISRPLILKLGSTSPSLRTLFHVNGPFLYKHMHKHRRNNRSSFPILTTQAVY
TQGGVSISSLDTHKLAPKREMVELETDAISILNERIRREHGKREATRPVMDSQEADKYIQ
LVKEQQQRGLQKLKGDRERKEGGVFSYKVDPYTLRSGDYVVHKKVGVGRFVGIKFDVPKG
STEPIEYAFIEYADGMAKLPVKQAARMLYRYNLPNESKKPRTLSKLSDTSVWERRKIKGK
VAIQKMVVDLMELYLHRLKQRRPPYPKSPAMAEFAAQFPYKPTPDQKQAFIDVEKDLTER
ETPMDRLICGDVGFGKTEVALRAIFCVVSAGRQAMVLAPTIVLAKQHFDVISERFSKYPS
TKVGLLSRFQTKAEKEEHLNMIKKGDLAIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK
QKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAFGKEK
VIAAIQYELDRGGQVFYVLPRIKGLEIVMDFLEQSFPDVDIAIAHGKQYSKQLEETMEKF
AQGDIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAYAYLFYP
DKSLLSDQALERLAALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFE
MLFESLSKVEEHRVVSVPYQSVQIDISINPRLPSEYINYLENPMEIINEAEKAAEKDIWS
LVQFTENLRRQHGKEPYSMEILLKKLYVQRMAADLGISRIYASGKMVGMETNISKRVFKL
MTDSMTSDAHRNSLLFEEDQIKAELLLELPREQLLNWIFQCLAELHASLPALIKY
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcctcccttcttccggtaccagatatctccaggcctctcatactcaaactcggctct
acttctccttctctgcggacccttttccatgtcaacggccctttcctctacaaacacatg
cacaaacacagacgcaataatcggtcttcatttccaatattaaccacccaggctgtctac
actcaagggggagtctccatctccagtctcgacacccacaaattggctccaaaaagagaa
atggtggagctcgagactgatgccatctccattctcaacgaaagaatacgccgtgagcac
ggcaagagagaggccacaaggcctgtaatggactcccaggaggctgacaagtacattcag
ctggtgaaggagcagcagcagaggggattgcagaagctcaaaggcgatagggaaagaaag
gaagggggtgtttttagctacaaggttgatccttacacgctgcgttctggggactatgtt
gttcacaagaaagtaggcgttggcagattcgttgggattaagttcgatgtgcctaagggt
tccactgagcccattgagtacgcctttatcgagtatgctgatggtatggctaagcttcct
gttaagcaggctgctcgcatgctctatcgatataatctcccaaatgaatcaaaaaagcct
aggactttaagcaagttgagtgacactagtgtatgggagaggagaaagatcaaagggaag
gttgcaattcaaaagatggttgtagatttaatggagctctatttacataggctgaaacaa
agaagacctccttacccaaagagtcctgccatggctgaatttgcagctcagtttccttat
aaacctacaccagatcaaaagcaggcttttattgatgtagagaaggacttaacagagaga
gaaactccaatggatagattaatatgtggagatgttgggtttggaaaaacagaagttgca
ttacgtgccatcttttgtgtagtatcagcagggaggcaagctatggtattggcacccaca
attgttttagccaagcaacattttgatgtcatttcagagaggttctccaagtatcctagt
acaaaggttggacttcttagtcggtttcagactaaagcagagaaagaggagcatttgaac
atgataaaaaagggtgatctggccattattgtaggaactcactcacttcttggaagccgt
gttgtgtataataatctaggccttcttgtagttgatgaggaacagaggtttggtgtcaag
caaaaggagaagattgcttcctttaaaacttcagttgacgttcttactctctctgcaaca
cctatacccagaacactttatttagcattgaccggtttccgtgatgccagtttaatttca
acaccacctccagaaagggttcctatcaaaactcatctttcagcatttggtaaagaaaag
gtcattgcagcaattcagtatgagctggaccgtggtggacaagtattttatgtcttacct
cgtattaaaggattggaaatagtgatggattttcttgaacaatcatttccagatgttgat
atagctattgctcatgggaagcaatattccaagcagcttgaggaaaccatggagaaattt
gcccagggtgatattaagattcttatttgcacaaatatagttgaaagtgggcttgacatt
caaaatgcaaacactatcatcattcaggatgttcaacaatttggcctggcacagttatat
cagttgcggggaagggttgggcgggcagataaagaagcttatgcatacttattttaccct
gataagtccttgctatctgaccaagcgttggagaggcttgcagctcttgaagaatgccgt
gaacttggccaaggttttcaactggcagagagagacatgggtatcagaggctttggtacc
atctttggtgagcaacagacaggggatgttggaaatgttggcattgatcttttctttgaa
atgctttttgagagtttgtccaaggttgaagaacatcgtgtagtttcagttccttaccag
tcagtgcagattgatataagcataaaccctcgtctcccttctgagtacataaattatcta
gagaaccccatggaaatcattaatgaagctgagaaagcagctgagaaagatatctggagt
ttggtgcaatttacagagaatcttcgacggcaacatggaaaagagccttattccatggaa
attcttttgaagaagctttatgtacagcgaatggcagcagatctcgggataagcagaata
tatgcttcaggaaagatggttggcatggaaaccaatattagtaagagggttttcaagctg
atgacagattccatgacatctgatgcgcaccggaactctttgctttttgaggaagaccaa
ataaaggcagaacttcttctggagctgccgcgagagcaactgctcaattggatctttcaa
tgcttggcagaacttcatgcttcacttcctgctcttattaaatattag
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