Tigriopus californicus (tidepool copepod): 131888054
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Entry
131888054 CDS
T09700
Name
(RefSeq) THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03013
Nucleocytoplasmic transport
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131888054
09122 Translation
03013 Nucleocytoplasmic transport
131888054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131888054
03041 Spliceosome [BR:
tcf03041
]
131888054
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
131888054
Spliceosome [BR:
tcf03041
]
Complex C
Other components
EJC/TREX
131888054
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131888054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
131888054
NCBI-ProteinID:
XP_059092815
LinkDB
All DBs
Position
10:complement(2397255..2402612)
Genome browser
AA seq
673 aa
AA seq
DB search
MAPIPSQSAALTKQFQTLLVTALSQSTPSTAESEAQLKAGHDKIQGDGELKRMCLDSAFR
QTLTQHVINPASEPDLSQCQKLVDLAIVAARLDLCAPTVPIVVLSDVFDLLTLEHCHALF
GCVEDNVKIWREARFFPVIKNNLLRICNDMLRRLSRTQNTAFCGRILVFLAKFFPFSDRS
GLNVISEFNLDNVTVFSESSEEFDARREDSVVIEEDGKNLNIDYALYRKFWQLQDFFRNP
IQCYEKLKWKTFSTYANDVLSTFQSFKLDAVSGKRKHENAIDKVDEQYFAKYLTNQNLLQ
LQLSDSNFRRYILIQFLILFQYLQSTVKFKSDTDVLSDEQTRWVQNSTSRIYTLMRETPP
EGHAFAKSIQHILNRGKQWNAWKNEGCKSFREDTTKENGQSNGGLKRPHRKRQLGREICQ
ATAAKRFIMGNKNLTDLWNLYPDNLDACAASERDFLPGLEEYFEEALEQLKPENQVEEDY
KKVNDGSWGWRALRLLAKKSPHFFTHGNNPIARLPDYLQQMLGKMGGSQSNGAPSTANLK
DNPNAVAPNPLTKRADEVDPPNDSKGVTGDDDDENNGTGGKVGPDLCTETMLEKLAVKVG
KYWKKMAPKLGVADEAVAKIGQEDGEDKDRCLKLFKQWIEIEAEGATVDEMIYILEGLKM
KPLAEGILFTKAE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccattccatcccaatctgcggctctcaccaagcagtttcagacgcttctggtg
acggccttaagtcagtccacgccatccacggccgagtctgaagcccaactcaaggccggc
cacgacaaaatccaaggggatggtgagctgaagcggatgtgtttggattcggccttccga
cagacgctcactcaacacgtgatcaatcccgcatccgagccggatttgagccaatgccag
aaattggtggatttggccatagtggcggcgcgtttggatttgtgtgcgcccaccgttccc
attgtggtgctctccgatgtgtttgacttgctcaccttggagcattgccacgccctcttt
ggttgtgtcgaggataatgtcaagatttggcgggaggcgcgattctttcccgtgatcaag
aacaacctcttgcggatttgcaacgacatgctgaggcgtctctcgcgaacccagaatacg
gcattttgtgggcggatcctggtgtttctggccaagttcttcccgttctcagatcgctcc
ggactgaatgtgatctcggaattcaacctcgacaacgtgaccgttttcagcgaaagctcg
gaagagttcgatgctcggcgagaagattccgtggtcattgaagaggatgggaagaatttg
aacatcgattacgcgctctaccgcaagttctggcaactccaggactttttccgcaatcca
atccaatgctatgaaaagctcaaatggaaaaccttttcaacatatgccaacgacgtgttg
agcacgtttcaaagcttcaaattggatgccgtgtccgggaagaggaagcacgagaacgcc
atcgataaagtggatgaacagtatttcgccaagtatttgaccaatcaaaacctgcttcaa
ctccaattgagcgactcgaacttccgtcgctacatcctcatccaattcctgatcttgttc
caatacctccaatccacggtcaaattcaaaagtgatacggatgttctgagtgatgagcaa
acgcgttgggttcagaactccacgtcccggatctacacgttgatgcgcgaaacgccccca
gaaggacacgccttcgccaaatccattcaacacatcctgaacagaggcaagcagtggaat
gcttggaaaaacgaaggctgcaaatcgtttcgcgaggacaccaccaaggaaaacggccaa
tccaatggtggcctcaagcgaccccacaggaaacggcaattgggacgcgagatttgccaa
gcgactgcggccaagcgttttatcatgggcaacaagaacctgactgatctgtggaatctc
tatcccgacaatttggatgcttgtgctgcttcggagagggacttcctcccgggtctggag
gagtacttcgaggaggccttggagcaactgaagcccgagaatcaggtggaagaggattac
aagaaagtgaatgacggatcctggggttggcgtgccctccgtttgttggccaagaagagt
ccgcatttcttcacccacggcaacaatccaatcgctaggctccccgactacctccagcag
atgctgggcaaaatgggcggatctcaatcgaatggcgcaccctcaacggccaacctcaaa
gacaatcccaatgcagttgctcccaacccactgaccaaacgtgcggacgaggtcgatccg
cccaacgactccaaaggcgtcactggcgacgatgacgacgagaataacggaaccgggggc
aaagtggggcccgacctttgtaccgagacaatgttggagaaactagcggtcaaagtgggc
aagtactggaagaagatggcccccaagttgggcgtggctgatgaggccgtggccaagatc
ggtcaagaggacggcgaagacaaagatcgatgcctgaagttgttcaagcaatggatcgaa
attgaggctgaaggagccacggtggacgaaatgatctacatcctagagggtttgaaaatg
aagccattggccgagggaatcttgttcactaaagcagaataa
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