Tigriopus californicus (tidepool copepod): 131888123
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Entry
131888123 CDS
T09700
Name
(RefSeq) small nuclear ribonucleoprotein-associated protein B-like
KO
K11086
small nuclear ribonucleoprotein B and B'
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131888123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131888123
03041 Spliceosome [BR:
tcf03041
]
131888123
03032 DNA replication proteins [BR:
tcf03032
]
131888123
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
131888123
Spliceosome [BR:
tcf03041
]
Complex A
U1 snRNP components
Sm proteins
131888123
U2 snRNP components
131888123
Complex B
U1 snRNP components
131888123
U4/U6.U5 tri-snRNP components
131888123
Complex C
U2 snRNP components
131888123
DNA replication proteins [BR:
tcf03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
131888123
BRITE hierarchy
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
131888123
NCBI-ProteinID:
XP_059092892
LinkDB
All DBs
Position
10:3797370..3799013
Genome browser
AA seq
183 aa
AA seq
DB search
MVVGRNNKMSAYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKSKSAKSAE
REEKRVLGLVLLRGENIVSMTVEGPPPADEGMPRVPIPGAGGPGMGRAAGRGVPMGAGGA
APGLSGPVRGVGGPAPSMMAPGGMAVSAPPQMRGPPPAGRGGPPGGFGRGGGPPSGFGRG
FSY
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atggtggtcggtcgcaataacaagatgtccgcgtacatcaactaccgcatgcgagtgatt
cttcaagattcgcgtaccttcatcggcaccttcaaagcctttgacaagcacatgaacctc
atcttgggcgattgcgaggagttccgcaagctcaaatccaaatctgccaagtctgccgag
cgagaagagaagcgtgtcctcggattggtccttctccgcggcgaaaacatcgtgtccatg
accgtggaaggacctccacccgccgacgaagggatgccccgtgtgcccattccgggggcg
ggtggacctggcatgggtcgggctgccggtcgtggcgtgcccatgggtgcgggtggtgcc
gctccaggtttgtcaggtcctgttcgaggagtgggtggacctgccccctccatgatggcg
ccgggcggtatggcggtgagtgccccgcctcagatgcgaggcccacccccagcgggtcgt
ggcggtcctcctggcggtttcggccgtggtggtggtcctccgtccggctttggccgtgga
ttttcgtattaa
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