Tigriopus californicus (tidepool copepod): 131888512
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Entry
131888512 CDS
T09700
Name
(RefSeq) N-glycosylase/DNA lyase-like isoform X1
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
131888512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131888512
Enzymes [BR:
tcf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
131888512
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
131888512
BRITE hierarchy
Motif
Pfam:
OGG_N
HhH-GPD
HHH
Motif
Other DBs
NCBI-GeneID:
131888512
NCBI-ProteinID:
XP_059093368
LinkDB
All DBs
Position
10:6489339..6491058
Genome browser
AA seq
340 aa
AA seq
DB search
MDGILGKMSWKLIPCLRSELRLDIVLKCGQSFRWKSFNEQPDQWIGVLDSRVWLLSQDHD
HLKYKTFPKAEDSLALDSFLTDYFQLKVKLEPLYKAWAKEDPVFEKISSKFSGVRMLRQH
PVENLFSFICSSNNNIQRISGMVENLCIHFGTEIWNNEDTSYFTFPSVEQLAQKPTQVEK
KLRDLGFGYRAAYIAKSARQIADKGGEEYLMKLRTLPYIEARDELLKLTGIGPKVADCVL
LMSLDQTAAIPVDTHMFQIAATKYLPHLKGYKSVTDKVYKEIGDHFRSLYGDYSGWAHSV
LFSADLKHFQDIESDANTKPDVKPKDSKSSGPSRPKKRKK
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggatgggatcttaggcaaaatgagttggaaactcattccttgtttaagatccgagctc
cgtctcgatatcgtgctcaaatgcgggcaaagtttccggtggaaaagcttcaacgagcaa
cccgatcaatggatcggcgtgcttgattcccgggtttggctcttgtcccaagaccacgac
catttgaagtacaaaacatttcccaaggcggaagactccctagctttggattcgtttctc
acagactacttccaactcaaggtgaaattggaaccattatataaagcttgggccaaagag
gatccagtgtttgagaagatttcaagcaagttttctggagtgcgaatgttacgacaacat
cccgttgaaaacctcttctctttcatatgctcttctaacaacaatattcaaaggatctca
ggcatggtcgaaaacttatgtattcattttggaaccgagatctggaacaacgaggacacg
tcttatttcacgtttccttccgtggaacaactagctcagaagccaacccaagtggaaaag
aaacttcgcgacttgggttttggttatcgagccgcttatatcgccaaatcggcgagacaa
atagccgataaaggcggcgaggaatatttgatgaagcttcgaacattgccctacatagaa
gcccgagatgaattgttgaaactgacaggaattgggcctaaggtcgcagattgtgtactt
ttgatgtcgttggatcagactgcagcgattccagtggatacgcacatgtttcaaattgca
gctaccaaatacctacctcacctaaagggctacaagtcggttacagataaggtctacaaa
gagattggggaccattttcgatcgctttacggagattactctggatgggctcattcggta
ttattcagcgcggatttgaaacatttccaagatattgaatcggatgcaaacaccaaacca
gatgtgaagcccaaagactccaaatcatctggacccagccgtcccaagaaaaggaaaaaa
taa
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