KEGG   Thermococcus chitonophagus: CHITON_1858
Entry
CHITON_1858       CDS       T04536                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tch  Thermococcus chitonophagus
Pathway
tch03030  DNA replication
tch03410  Base excision repair
tch03420  Nucleotide excision repair
tch03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tch00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CHITON_1858
   03410 Base excision repair
    CHITON_1858
   03420 Nucleotide excision repair
    CHITON_1858
   03430 Mismatch repair
    CHITON_1858
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tch03032]
    CHITON_1858
   03400 DNA repair and recombination proteins [BR:tch03400]
    CHITON_1858
Enzymes [BR:tch01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CHITON_1858
    6.5.1.6  DNA ligase (ATP or NAD+)
     CHITON_1858
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CHITON_1858
DNA replication proteins [BR:tch03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CHITON_1858
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CHITON_1858
DNA repair and recombination proteins [BR:tch03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CHITON_1858
   NER (nucleotide excision repair)
    Other NER factors
     CHITON_1858
   MMR (mismatch excision repair)
    Other MMR factors
     CHITON_1858
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Tcp10_C Methyltransf_8 DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: CUX78637
UniProt: A0A160VTY7
LinkDB
Position
I:1725004..1726683
AA seq 559 aa
MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKVPDDHLEFIPYLILGDVFPEWDERELGV
GEKLLIKAVAMATGVDAKEIENSVKDTGDLGESIALAVKRKKQKSFFSQPLTIKRVYQTL
VKVAETTGEGSQEKKMKYLANLFMDAEPIEAKYIARTVLGTMRTGVAEGLLRDAIALAFH
VKVELVERAYMLTSDFGFVAKVAKLEGNEGLAKVTIQIGKPIKPMLAQQAANIKEALLEM
GGEAEFEIKYDGARVQVHKDGDRIIVYSRRLENVTRAIPEIVEAIKEAVKPEKAIVEGEL
VAIGENGRPLPFQYVLRRFRRKHNIEEMMKKIPLELNLFDVLYVDGVSMIDTKFIERRKK
LEEIIEPNGKIKIAENLITKKVEEAEAFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLK
IKPTMENLDLVIIGAEWGEGRRAHLLGSFILGAYDPETGEFLEVGKVGSGFTDEDLVEFT
KMLKPLIIKEEGKRVWVEPKIVIEVTYQEIQKSPKYRSGFALRFPRYVALRDDKGPEDAD
TIERIAQLYELQERMKGKV
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgaggtaccttgagttagcccaactttatcagaagttagagaagaccacaatgaaacta
ataaagaccagacttgttgcagatttccttaaaaaagttccagacgatcaccttgaattc
ataccctatttaatcctgggagacgtatttccagagtgggatgaaagggagcttggtgtt
ggtgagaagttactcataaaggccgttgccatggcaacgggcgttgatgctaaggaaata
gagaactccgtaaaagataccggtgacctgggagagagcatagcacttgccgtgaagagg
aagaagcaaaagagcttcttctcgcaaccactaacgatcaagagagtgtatcaaacccta
gtcaaagtcgcagaaacaactggagaaggaagtcaggaaaagaagatgaagtatctagcg
aaccttttcatggacgccgagccaattgaagctaagtacatagcgaggacagtcctggga
accatgagaactggagttgctgaaggcctactgagggatgccatagccctagcattccac
gttaaggtggagctcgttgagagggcgtacatgctcacgagtgactttggatttgtggct
aaagtggcaaagttggagggcaacgaaggactagcgaaagttacgatacagataggaaag
ccaataaagccaatgctggcacagcaggccgctaacataaaggaagctctcctcgagatg
ggtggggaggccgagtttgagataaaatatgacggagccagggtgcaggtgcacaaggat
ggagataggataatagtatactcaaggaggctggagaacgtcacgagagcaattccggag
atagtagaggcaataaaagaggccgtaaagccagaaaaggcaattgttgagggcgagctc
gtggcgataggagagaacggaaggccactgcccttccagtacgtcctaaggaggttcagg
agaaagcacaatatagaagagatgatgaagaagataccgctcgagttgaacctcttcgac
gttctctacgttgatggtgtcagcatgatagacactaagttcatagagaggagaaagaag
ctcgaggagataatagagccgaacggaaagataaagatagctgagaatttaataacgaag
aaagtcgaagaggcggaggcattctacaagagggcccttgagatggggcatgaaggttta
atggcgaagaggcttgatgcagtttacgagccaggtaacagaggcaagaagtggctcaag
ataaagccaactatggaaaaccttgatctcgttataataggagcggaatggggagaggga
aggagagcacacctgctaggatcgttcatcctgggagcatatgatccagaaacgggagag
ttccttgaagtcggaaaggtcgggagcggattcacggatgaagacttggtagagtttacc
aagatgctgaagcccctgatcatcaaagaggaaggaaagagggtgtgggtcgagccgaag
atagttattgaagtgacataccaagagatacagaagagccccaagtacaggagcgggttc
gccctaaggttccccaggtacgttgccctgagagacgacaagggaccagaggatgcagac
acgatagaaagaatagcccagctgtatgagctgcaggaaaggatgaagggaaaggtttaa

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