Thauera chlorobenzoica: Tchl_2001
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Entry
Tchl_2001 CDS
T04612
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tcl
Thauera chlorobenzoica
Pathway
tcl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tcl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Tchl_2001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcl03021
]
Tchl_2001
Transcription machinery [BR:
tcl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Tchl_2001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
DUF1376
DNA_pol_phi
RRN3
Motif
Other DBs
NCBI-ProteinID:
APR04847
UniProt:
A0A1H5SFM3
LinkDB
All DBs
Position
complement(2156311..2158308)
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AA seq
665 aa
AA seq
DB search
MAREKAKDPRKDGASKSRSSKAKDKVAQVVENPVVAPLDAEVRRTRLKTLITLGKERGYL
TYAEISDHLPDDVADAEQIEGIIATFNNMGIQVYDEAPAAEDLLMSDSVAANVDEDVAEE
EAEQALSSVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMVQAISACP
TTIAEMLQIVDRIARDEAKIDELIDGLIDPNANGEEAAEDDSDDDAGSAAIGTDDDSSDS
DDDSDDDDESSAESANAASLLQLKNDALARFEVIRALYVEKMAALEKKGSQDIVYLALQQ
QISDELLNIRFTAKAIERLCDSVRHMVEQVRAHERQILQLCVDRAGMPRQHFIKIFPGQE
TKLDWLKDEIAAGKNYAEGLMRIHPAVLEEQQKLIDLQDRIGIPLKELKDINRQMSTGEA
KMRRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY
ATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMP
EEKIRKIMKISKEPISMETPIGDDDDSHLGDFIEDTATLAPAEAAMYSSLRDATGEVLDS
LTAREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSF
LDSDA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcgaaaaagccaaggatccgcgcaaggacggcgccagcaagagccgctcatcc
aaagcgaaggacaaggtcgcccaggtcgtcgaaaaccccgtcgtcgcgccactcgacgcc
gaggtgcgacgcacccgtctgaaaaccctgatcacgctcggcaaggagcgcggctacctg
acctatgccgagatcagcgaccacctgcccgacgatgttgccgacgcggaacaaatcgaa
ggcatcatcgccaccttcaacaacatgggcatccaggtctacgacgaggcccctgcggcc
gaagacctgctgatgtccgacagcgtcgcggccaacgtcgacgaagacgtcgccgaagag
gaagccgaacaggcgctgtcctcggtcgactccgaattcggtcgcaccaccgacccggta
cgcatgtacatgcgcgagatgggcacggtcgaactgctcacccgcgaaggcgagatcgag
atcgccaagcgcatcgaggacggcctcaagcacatggtgcaggccatctccgcatgcccg
acgacgattgccgaaatgctccagatcgtcgaccgcatcgcccgcgacgaggcgaagatc
gacgagctcatcgacggcctcatcgaccccaacgccaacggcgaggaagccgccgaggat
gacagcgacgacgacgccggcagcgccgccatcggcaccgacgacgacagcagcgacagc
gacgacgacagcgacgacgatgacgagagcagcgccgagagcgccaatgccgcatccctg
ctgcagctcaagaacgacgccctggcccgcttcgaagtgatccgcgcgctctacgtcgaa
aagatggcagcgctggagaagaaaggctcccaggacatcgtctacctcgccctgcagcaa
cagatttccgacgagttgctgaacatccgcttcaccgccaaagccatcgagcgtctgtgc
gactcggtacgccacatggtggagcaggtgcgcgcgcacgagcgccagatcctgcagctg
tgcgtcgaccgcgccggcatgccgcgccagcacttcatcaagattttccccgggcaggaa
accaagctcgactggctcaaggacgagatcgccgccggcaagaactacgccgaaggcctg
atgcgcattcaccccgcggtgctcgaagagcagcaaaagctcatcgacctgcaggaccgc
atcggcatcccgctcaaggaactcaaggacatcaaccgccagatgtccaccggcgaagcc
aagatgcgccgcgccaagcgcgaaatgaccgaagccaacctgcgcctggtgatctcgatc
gcgaagaagtacaccaaccgcggcctgcagttcctcgacctgatccaggaaggcaacatc
ggcctgatgaaggcggtggataaattcgaataccgccgcggctacaagttctcgacctat
gccacgtggtggatccgccaggcgatcacgcgctcgatcgccgaccaggcgcgcaccatc
cgcatcccggtgcacatgatcgagacgatcaacaagatgaaccgcatcagccgccagatc
ctgcaggaaaccggcctcgagcccgaccccgcgaccctggccgagaaaatggagatgccc
gaggagaagatccgcaagatcatgaagatctccaaggaaccgatctccatggagacgccg
atcggcgacgacgacgactcccacctgggtgacttcatcgaggacaccgccaccctggct
ccggccgaggcggcaatgtactccagcctgcgcgacgccaccggcgaagtgctcgactcg
ctcaccgcacgcgaggcaaaagtgctgcgcatgcgcttcggcatcgagatgaacaccgac
cacaccctggaagaagtcggcaagcagttcgacgttacccgcgagcgcatccgtcagatc
gaagccaaggccctgcgcaagctgcgccacccgagccgctcggaaaaattgcgcagcttc
ctcgacagcgacgcgtaa
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