Thermaerobacter composti: Q5761_00265
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Entry
Q5761_00265 CDS
T09555
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tcp
Thermaerobacter composti
Pathway
tcp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q5761_00265 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcp03400
]
Q5761_00265 (mfd)
Enzymes [BR:
tcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q5761_00265 (mfd)
DNA repair and recombination proteins [BR:
tcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Q5761_00265 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
WPD19151
LinkDB
All DBs
Position
50284..53937
Genome browser
AA seq
1217 aa
AA seq
DB search
MTGRPAQDLTDELLRLWQQLPEFPSLAGGVRRELPAQAVHGIAGSAAASLLVALAAATGR
TLFVLTADQGAADALAADLRAWVPADGVVVFPAIEVLPFEVLATSPELAAARLQALARIR
QGPCIVVAPVAAVARRLPHPEQWAAGLLDLEPGQGLERDALLARLVAAGYQRVEQVERPG
ELAARGGIVDVYPPAGEPLRIEFFGDEIESLRRFDPTTQRSTERLDRAQLVPARELVLDE
PAWRRGLARLAEELERLREQTRQRRGGAVRQLLERLEQDLARLEAERAVDLAERYLPLFV
AEMATLLDYAPGPALAVGVEPRALEEAVADRERQWQERQADLLVRGEILPAQASLYLDAG
GLWRALASRPVLYLSLLARAPGQGPEPRQVFAITARPAPMFHGQWDLFEEEIRTWQRQHY
RVLVVAGDEERARRVQQALAAGDVAARSASALGVPDPGEVRVAPAALSEGFEVPALRWVV
LTEREVLGRRVARRRSPTAAAERAETQAQALERLVDLKPGDYVVHVHHGIGRFLGLRTME
IQGVHRDYLTIQYAGGDRLYVPTDQIELVQKYVGAEGHQPRLAKLGSGEWHKVKQRVKES
VRELAGELLALYAARQAVRGHAFSPDTPWQRQFEDAFPYQETPDQLAAIAAVKADMERPV
PMDRLLVGDVGFGKTEVAMRAAFKAVQDGKQVAVLVPTTVLAYQHERTFKERFAPFPVTI
RTLSRFASPAEQAEILTGLAQGTIDIVIGTHRLVQPDVRFKDLGLLIIDEEHRFGVAHKE
RLKQLKQNVDVLTLSATPIPRTLHMALAGIRDLSRIDTPPENRFPVQTFVVEWHESLVRD
AIQRELRRGGQVFYVHNRVQSIQAVRRRLERLVPEARFAVAHGQMPEGELERVMVDFMAG
KADVLVCTTIIESGLDMPNVNTLIVEDADRFGLAQLYQLRGRVGRSDRVAYAYFTYRRDK
VLTEDAQKRLQAIKDFTELGAGFKLALRDLEIRGAGNLLGPEQHGFMLSVGFDLYAQLLE
EAVAELRGRRRPARLKPVVDLVVDAHIPDGYIRDARQKIEFYKRVNLAETPAELAEVREA
LQDRYGPPPEPVRNLLALAEIRQLASRCGVFRIEQQGTRIDLEAVPPQAEALARTCEALR
PQLGRRLQPVRGRPAAFFRTDGLGEREVLTALRRILRELWRHTPGGGEGAAASAGAAGPQ
AGEAQPTAAGASRPSRR
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgacggggcgaccggcccaagacctcaccgacgagctcctgcgcctgtggcagcagctg
ccggagttcccctccctggcgggaggggtgcgccgggaactgcccgcccaggcggtccat
ggcatcgcggggtcggcggcggcgagcctcctggtggccctggccgccgccacagggcgg
accctcttcgtgctcaccgcggaccagggcgcggcggacgccctcgccgccgacctgcgc
gcctgggtgccggcggacggcgtggtggtcttccccgccatcgaggtgttgcccttcgag
gtcctggcgaccagccccgaactcgccgccgcccgcctccaggccctggcccgcatccgg
caggggccgtgcatcgtcgtggccccggtggccgccgtcgcgcgccgcttgccccacccc
gagcagtgggcggccggtctcctcgacctggagccgggacaggggctcgagcgcgatgcg
ctgctggcccggctcgtcgcggcgggctaccagcgggtcgagcaggtggagcgccccggg
gagctggccgcgcgcggcggcatcgtcgacgtctacccgcccgcgggcgagcccctgcgc
atcgagttcttcggcgacgagatcgagtcgctgcgccgcttcgacccgacgacccagcgc
tccaccgagcgcctggaccgggcgcagctggtgccggcccgcgagctggtgctggacgaa
ccggcttggcgccgcggcctggcccgcctggcagaggagcttgagcggctgcgggagcag
acccggcagcgccgcggcggggcggtgcgccagttgctggagcggctggagcaggacctg
gcgcgcctggaggccgagcgggcggtggacctggccgagcggtacctccccctcttcgtg
gccgagatggccacgctgctggactacgcgccgggacccgccctggccgtgggggtcgag
ccccgtgccctcgaggaggcggtggccgaccgggagcggcagtggcaggagcgccaggcg
gatctcctggtccgcggggagatcctgcccgctcaggcatccctgtacctggacgcgggc
gggttgtggcgcgccctggcctcgcggccggtgttgtacctctccctgctggcgcgggcg
cccggccagggccccgagccgcggcaggtctttgccatcaccgctcggccggcgcccatg
ttccacggccagtgggatctgttcgaagaggagatccgcacctggcagcgccagcactac
cgggtcctggtggtggcgggcgacgaggagcgggctcgtcgggtgcaacaggccctggcc
gcgggggacgtggcggcgcggagcgcatccgccctcggcgtcccggaccccggggaggtg
cgggtggcgccggccgccctgagcgagggcttcgaggtgcccgccctgcgctgggtggtg
ctgacggagcgcgaggtgctgggccggcgggtggcccgccgtcgcagccccacggccgcc
gccgaacgggccgagacccaggcgcaggccctggagcgcctggtggacctgaagccgggc
gactacgtggtccacgtgcaccacggcatcggccggttcctcggcctgcgcaccatggag
atccagggggtgcaccgcgactacctgaccatccagtacgccggcggcgaccggctctac
gtgccgacggaccagatcgagctggtccagaagtacgtcggggccgaagggcaccagccg
cggctggccaagctcggttccggcgagtggcacaaggtcaagcagcgggtcaaggagtcg
gtgcgcgagttggccggcgagctgttggccctctacgccgcgcgccaggccgtgcgcggc
cacgccttcagcccggacacgccgtggcagcggcagttcgaggacgccttcccctaccag
gagacgccggaccagctggccgccatcgccgccgtcaaggcggacatggagcggcccgtg
cccatggaccggctgctggtgggcgacgtgggcttcggcaagaccgaggtggcgatgcgg
gccgccttcaaggccgtgcaggacggcaagcaggtggccgtgctggtgcccaccaccgtg
ctggcctaccagcacgagcgtaccttcaaggaacgcttcgccccgttccccgtcaccatc
cgcacgctgagccgcttcgcgtcgccggcggagcaggcggagatcctgaccggcctggcc
caggggaccatcgacatcgtcatcggcactcatcggctggtgcagcccgacgtgcggttc
aaggacctggggctcttgatcatcgacgaggagcaccgcttcggcgtcgcccacaaggag
cggctcaagcagttgaagcagaacgtggacgtgctcaccctgtcggccacgccgatcccc
cgcacgctgcacatggcgctggcgggcatccgggacctcagccgcatcgacacgcccccg
gagaaccgcttcccggtgcagaccttcgtcgtggagtggcacgagtccctggtccgcgac
gccatccagcgggagctgcggcggggcggccaggtgttctacgtccacaaccgggtccag
agcatccaggcggtacgacggcgtctggagcggctggtccccgaggctcgcttcgcggtg
gcccacggccagatgccggagggcgagctggagcgggtgatggtcgacttcatggcgggc
aaggcggacgtgctggtctgcaccacgatcatcgagtccggcctcgacatgcccaacgtc
aacacgctgatcgtggaggacgccgaccgcttcggtctggcccagctctaccagctgcgc
gggcgggtcgggcgatcggaccgggtggcgtacgcctacttcacctaccggcgcgacaag
gtcctgacggaagacgcccagaagcgcctccaggcgatcaaggacttcaccgagctgggc
gcgggcttcaagctggcgctgcgcgacctggagatccgcggcgccggcaacctcttggga
cccgagcagcacgggttcatgctgtccgtcggcttcgacctgtacgcccagctgctggag
gaggccgtggccgagctgcgcggccgccggcggccggcgcggctgaagccggtggtcgac
ctggtggtcgacgcccacatccccgacggctacatccgcgacgcccgccagaagatcgag
ttctacaagcgcgtcaacctggcggagacgccggccgagctggccgaggtgcgcgaagcc
ctgcaggaccgctacggcccgccgcctgagcccgtgcgcaacctcctggcgctggccgag
atccggcagctggcctcgcgctgtggcgtcttccgcatcgagcagcaggggacgcgcatc
gacctggaggcggtgccgccgcaggcggaggcgctggcgcgcacctgcgaggcactgcgg
ccccaactgggccggcggctccagccggtgcggggccggccggccgcgttcttccgcacc
gatggactgggggaacgcgaggtcctgacggcgctgcggcgcatcctgcgggagctgtgg
cgtcacaccccgggcggcggcgagggggccgcggcgtccgcgggggcggccgggccgcag
gccggggaggcgcaaccgacggcggcgggggcgtcccgaccgtcccggcggtga
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