Thermaerobacter composti: Q5761_05575
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Entry
Q5761_05575 CDS
T09555
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tcp
Thermaerobacter composti
Pathway
tcp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Q5761_05575 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcp03400
]
Q5761_05575 (ligD)
Enzymes [BR:
tcp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Q5761_05575 (ligD)
DNA repair and recombination proteins [BR:
tcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Q5761_05575 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_C
DNA_ligase_A_M
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
WPD20104
LinkDB
All DBs
Position
complement(1400579..1401739)
Genome browser
AA seq
386 aa
AA seq
DB search
MAGGGPPIPRTWHELWCPGRLPPMLARRAPAPFSSPAYRFEVKWDGYRCLAFADPVLGRT
FLQSRHGHDLAPRFPELAGLHRLLPAAAVLDGEIVALVAGRPSFAALQRRAAGVRAAAGA
ARDRSAAIAPVVLVLFDLLGLAGEVWLRRPLADRVHRLERLFPQGSAPGVALSRGVEGQG
EALFARVRDQGLEGVVAKRLDSPYLPGWRTDHWQKIKAERELEAVVGGVVPGGRAAGVGT
LLLGLYGPDGALHYVGDVSTGLGGEAIRHLLGRLRPRATCPFATVPARARHRPVVWVEPS
LVCEVAYLHWTPQGHLRHPVFRRWRDDRAPRDCRLPADAGHPAAGRDPDGPGDGPLGREQ
GLPGGSPRGRGEDLPGGNPRERGEDG
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
gtggcgggcggagggccgcccatcccgcggacgtggcacgagctctggtgcccgggccgg
ctgccgcccatgctggcccgccgggcccccgcgcccttctcctcgccggcctaccgcttc
gaggtcaagtgggacgggtatcgctgcctggccttcgccgaccccgtcctgggacgcacc
ttcctccagtcccgccacggccacgacctggcgccgcgattccccgagctggccggcctc
caccgcctgctgccggcggccgcggtcttggacggggagatcgtcgccctggtggccggg
cggccctccttcgccgccctccaacggcgggccgccggggtgcgcgcggcggccggcgcg
gcccgcgaccggtccgccgccatcgccccggtggtgctcgtcctcttcgacctcctcgga
ctagccggcgaggtctggcttcgccgcccgctggccgaccgcgtccaccgcctggagcgc
ctcttcccccaggggtcggcgcccggcgtcgccctctcccgcggcgtcgagggccagggc
gaggcgttgttcgcccgcgtccgcgaccaggggctggagggcgtggtggccaagcgcctg
gacagcccctatttgccgggatggcgcaccgaccactggcagaagatcaaggcggaacgg
gagctggaggcggtggtgggcggggtggtgcccggaggccgggcggccggggtggggacg
ctgctcctggggctctacggtccggacggggcgctgcactacgtgggcgacgtcagcacg
ggcctcggcggcgaggcgatccgccacctgctgggacgcctccgcccgcgagccacctgc
cccttcgccacggtgccggcgcgcgcccgtcaccggccggtggtctgggtcgagcccagc
ctggtgtgcgaggtggcctacctgcactggacgccccaggggcacctgcggcaccccgtc
ttccggcgctggcgcgacgaccgggcgccgcgggactgccggctgcccgccgacgcgggt
cacccggccgcgggccgcgacccggacggtcctggcgacggcccccttgggcgagagcaa
ggcctccccggagggagcccccgcgggcgcggggaggacctccccggagggaacccccgc
gagcgaggagaggacggctga
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