Pseudoduganella chitinolytica: PX653_09880
Help
Entry
PX653_09880 CDS
T08857
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tct
Pseudoduganella chitinolytica
Pathway
tct03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PX653_09880 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tct03400
]
PX653_09880 (ligD)
Enzymes [BR:
tct01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PX653_09880 (ligD)
DNA repair and recombination proteins [BR:
tct03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PX653_09880 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WEF35048
LinkDB
All DBs
Position
complement(2234564..2237230)
Genome browser
AA seq
888 aa
AA seq
DB search
MKDSLKTYKAKRNFAITPEPAEGGEEGKEALTFVIQKHWATRLHYDFRLELDGTMKSWAV
PKGPSYDTHDKRMAVHVEDHPISYNDFEGTIPEKQYGAGKVIIWDKGTWHPLGDPRQGYR
DGNLKFELRGHKLRGKWVLVRMKRSGEKQEPWLLIKEKDDYVRSADEFSVIDEMPDSVKA
LGMPTDEPLTPQAEAAEETARVHAAPARKKSAAAKGKAAKAAKAEEGGAGVRCALPETFT
PELATLVDAPPADPHDWLFEIKFDGYRLLARVDGKDIRLITRNGNDWTHKLEPLRAAIEK
MKLPKGWYDGEIVVHDQSGRPNFGLLQQAFDGTRTSNIVYFVFDAPYLDGYDLREVPLAQ
RRELLKTVMDRVGNDVVRYSAELEAPPAEMVAAACQMGLEGIIGKRRDSTYVSRRSPDWI
KLKCAQRQEFVIGGYTDPKGSRVGIGSLLLGYYGEDGKLHYAGNVGAGFNDTTLREITGK
LKKLASDTSPFAPSKSIEKRAHWVKPTLVAEVTFGEWTASGSIRHSVFQGLRADKKATSV
TREKAAHMETLVEGTMQTQTAVKAKTTKAKATSAAPAEKSTPSRAPEGLDADSKLPASLK
VTNPDRLIDPASGTTKIGLVRYYALVADLMLEHLKGRPVALVRAPAGVGGELFFQKHSEV
GKLPGVKQFPQALDPDHPSMLEVATMQGLLSAAQWNVVEFHTQNAFGKNYEKPNRMIFDL
DPGQDVSWKQIQEAAQLMRAFLAELGLPSFLKTSGGKGLHVVVPLKPQHDWDTVKGFSKA
IVEHMAATLPDRFAYKSGPKNRVGKIFIDYLRNGRGATTVSAWSARTRAGLGISVPVDWS
ELEHLRGGDHWTVATVHDRLDEGNTPWADYAKSAVSITKAMKQLGYSV
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgaaagactctctcaagacctacaaggcaaagcgcaacttcgccatcacgccggaaccg
gccgagggcggcgaagaaggcaaggaagcgctgacgttcgtcatccagaaacactgggcg
acgcgactgcactacgatttccggctggaactggacggcacgatgaagagctgggccgtg
ccgaaagggcccagctacgacacgcacgacaagcgcatggccgtgcacgtcgaggaccat
cccatctcgtacaacgacttcgagggaaccattcccgagaagcagtacggcgcgggcaag
gtcatcatctgggacaaagggacgtggcacccgctgggcgacccgcgccagggctaccgc
gacggtaacctgaaattcgagctgcgcggccacaaattgcgcggcaagtgggtgctggtg
cgcatgaaacgctcgggcgagaagcaggagccgtggctgctgatcaaggagaaggacgac
tacgtgcgctcggccgacgagttctccgtcatcgacgagatgcccgacagcgtcaaggcg
ctgggcatgccgacggacgagccgctgaccccgcaggccgaggcggccgaggaaaccgcg
cgcgtgcacgcggcgccggcgcgcaagaaaagcgccgcagcgaagggcaaggccgccaag
gccgccaaggcggaggagggcggcgcaggcgtgcgttgcgcgctgccggagacgttcacg
ccggagctggccacgctggtggatgccccgcctgcggacccgcacgactggctgttcgag
atcaagttcgacggctaccgcctgctggcgcgggtggacggcaaggacatccggctgatc
acccgcaacggcaacgactggacgcacaagctcgaaccgctgcgcgcggccatcgagaag
atgaagctgcccaagggctggtacgacggcgagatcgtcgtgcatgaccagagcggccgg
cccaacttcggcctgctgcagcaggcgttcgacggcaccaggaccagcaatatcgtgtac
ttcgtgttcgacgcgccgtacctggacggctacgacctgcgcgaggtgccgctggcgcag
cggcgcgagctgctcaagaccgtcatggaccgcgtcggcaacgacgtggtgcgctactcg
gccgagctggaggcgccgccggcggagatggtggccgccgcctgccagatgggcctcgaa
ggcatcatcggcaagcggcgcgactcgacctacgtgtcgcgccgctcgcccgactggatc
aagctcaagtgtgcgcagcgccaggaattcgtcatcggcggctacacggacccgaagggc
tcgcgggtgggcatcggctcgctgctgctgggctactacggcgaagacggcaagctgcac
tatgccggcaacgtgggcgccggcttcaacgacacgacgctgcgcgagatcacgggcaag
ctgaaaaagctggccagcgacacgagtccgttcgcgccgtcgaaatcgatcgagaaacgc
gcccactgggtcaagcccacgctggtggccgaggtgacgttcggcgagtggacggccagc
ggctcgatccggcattccgtcttccagggactgcgcgccgacaagaaggcgacgagcgtc
acccgcgagaaggcggcccatatggaaacgctggtggagggaaccatgcagacacagacc
gccgtcaaggcgaagacaacgaaagccaaggcgacatcggcggcgccggccgagaaatcg
acgccgtcgcgcgcacccgaggggctggacgccgacagcaagctgccggcgtcgctgaag
gtgacgaacccggaccgcctgatcgacccggccagcggcaccaccaagatcggcctggtg
cgctactacgcgctggtggccgacctgatgctggagcacctgaagggacgcccggtggcg
ctggtgcgggcaccggccggtgtcggcggcgagctgttcttccagaagcactcggaggtg
ggcaagctgcccggcgtgaagcagttcccgcaggcgctggatccggatcacccgtcgatg
ctcgaagtggccacgatgcagggcctgctgtcggcggcgcagtggaacgtcgtcgaattc
catacccagaacgcgttcggcaagaactacgaaaagccgaaccgcatgatcttcgacctg
gaccccggccaggacgtgtcctggaagcagatccaggaagcggcccagctgatgcgggcc
ttcctggccgagctgggcctgccgtcgttcctgaagacgagcggcggcaagggcctgcac
gtggtggtgccgctcaagccgcagcacgattgggataccgtgaaggggtttagcaaggcg
atcgtcgagcacatggccgccaccttgccggaccgcttcgcgtacaagagcggaccgaag
aaccgggtcggcaagatcttcatcgattacctgcgcaacggccgcggcgccaccacggtc
agcgcctggtcggcccgtacccgcgccggcctgggcatctccgtgccggtcgactggagt
gagctggaacacctgcgcggcggcgaccactggacggtggcgacggtgcacgaccggctc
gacgaaggcaatacgccgtgggcggattatgccaagagtgcggtcagcattaccaaagcc
atgaagcagctgggctacagcgtctag
DBGET
integrated database retrieval system
