Thermomonospora curvata: Tcur_1023
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Entry
Tcur_1023 CDS
T01127
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tcu
Thermomonospora curvata
Pathway
tcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tcur_1023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcu03400
]
Tcur_1023
Enzymes [BR:
tcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tcur_1023
DNA repair and recombination proteins [BR:
tcu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tcur_1023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
ACY96609
UniProt:
D1A7M0
LinkDB
All DBs
Position
1165029..1168535
Genome browser
AA seq
1168 aa
AA seq
DB search
MTLTGLLDVAAGDRALAQALRRARADHDLVAPAALWPIVAASLARASETGVVLAVTATGR
EAEDLTAALGCFLDPHRVAHFPAWETLPHERLSPRSDTVGRRLAVLRRLAHPDPDDVAAG
PLDVVVTPVRAVLQPIVSGLGDLEPVRLRTGDEADLEEVVRRLADAGYQRVDLVEKRGEL
AVRGGILDVFPPTEEHPLRVEFWGDAVEEIRYFKAADQRSLEVAQDGLWAPPCRELPLNA
AVRQRARELAERHPALEEVLLRIADGEAVEGMEAFSPVLADRMQLLVELLPEGSSLLVCE
PERIRTRAHELVRTSQEFLEASWVNAAAGGQAPIDLGAAAFRDLAEVREQAAALGLARWT
VTALTPEEEDAVQLDVHPAEQYRGDTARMVGDIKRWVDERWRVVLVTAGHGPAARLAEML
GEEGLGARLADLPEPPEPGVVHVTTGTLGGGLVWPAARLALLTETDLSGQRASTRDMRRM
PSRRRGGIDPLQLRPGDYVVHEQHGVGRYVEMVSRTVQGATREYLVLEYARGDRLFVPTD
QLEEITRYVGGESPTLHRLGGADWAKSKARARKAVRQIAGELIRLYSARMATPGHAFGPD
TPWQRELEDAFPYTETADQLAAIEEVKADMEKPVPMDRLICGDVGYGKTEIAVRAAFKAI
QDGKQVAVLVPTTLLVQQHLSTFAERFAPFPVVVKPLSRFQTDAEVEQTLRGLADGTVDL
VIGTHRLFSAQARFKDLGLVIIDEEQRFGVEHKEELKRLRTQVDVLAMSATPIPRTLEMG
LTGIREMSTILTPPEERHPILTFVGPYDDKQIAAAIRRELLREGQVFFVHNRVRSIDRVA
AKLKELVPEARIATAHGQMNEHQLEKVMVDFWEKNYDVLVATTIVESGLDIPNANTLIVD
RADTYGLSQLHQLRGRVGRGRERGYAYFLYPPESPLSETAHERLATIAQHTEMGAGMYVA
MKDLEIRGAGNILGVEQSGHVAGVGFDLYVRMVGEAVRELKAKAGGEPEPPQLPETKVEL
PVDAHLPHDYVPGERLRLDAYRRIAAITSDEEIAEVRDELTDRFGAPPEPVLNLLEVARF
RARARRAGLTEVTVQGNHIKFAPVELPDSKQVRLQRLYPKSIYKAAARTLLVPAPKTAPL
GGRPLRDVALLKWATDLVEAMFAEPART
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgactcttactggacttttggacgtcgccgccggcgatcgggccctggcgcaggcgctg
cggcgggcgcgcgccgaccacgacctggtggccccggcggcgctgtggccgatcgtggcc
gcctcgctggcccgggcgagcgagacgggcgtggtgctggcggtgaccgccaccggccgc
gaggccgaggacctgaccgcggcgctgggctgctttctggacccccaccgggtggcgcac
tttccggcctgggagacgctgccgcacgagcggctgtcgccgcgctcggacaccgtcggc
cggcgcctggcggtgctgcgccgcctggcccaccccgaccccgacgatgtggccgccggg
ccgctggatgtggtggtcaccccggtgcgggcggtgctgcagccgatcgtctccgggctg
ggcgacctggagccggtgcggctgcgcaccggcgacgaggccgacctggaggaggtcgtg
cggcgcctggcggacgccggctaccagcgggtcgacctggtcgaaaaacgcggcgagctg
gccgtgcgcggtggcatcctggacgtcttcccgcccaccgaggaacacccgctgcgggtg
gagttctggggcgatgccgtcgaggagatccgctacttcaaggccgccgaccagcgctcc
ctggaggtcgcccaagacgggctgtgggcgccgccgtgccgggagctgccgctgaacgcc
gccgtccggcagcgggcccgcgagctggccgaacggcacccggcgctggaggaggtcctg
ctgcggatcgccgacggcgaggcggtcgagggcatggaggccttctccccggtgctggcc
gaccggatgcagctgctggtggagctgctgcccgaagggtcgtccctgctggtgtgcgag
ccggagcgcatccgcacccgggcgcacgagctggtgcgcaccagccaggagttcctggag
gccagctgggtcaacgccgccgccggcggccaggcccccatcgacctgggcgccgccgcc
ttccgcgacctggcggaggtgcgcgagcaggcggccgccctcggcctggcccgctggacg
gtgaccgcgctcacccccgaggaagaggacgccgtccagctggacgtccaccccgccgag
cagtaccggggcgacaccgcccggatggtcggcgacatcaaacgctgggtggacgaacgc
tggcgggtggtgctggtgacggccgggcacgggcccgccgcgcggctggcggagatgctg
ggcgaggagggcctgggcgcccgcctggccgacctgcccgagccccccgagccgggggtc
gtccacgtgaccaccgggacgctcggcggcggcctggtgtggccggcggcccgcctggcg
ctgctcaccgagaccgacctgtccgggcagcgcgcctccacccgggacatgcggcgcatg
ccctcgcggcggcgcggcggcatcgacccgctgcagctgcgccccggcgactacgtcgtc
cacgagcagcacggcgtcggccgctacgtggagatggtcagccgcaccgtgcagggcgcc
acccgcgagtacctggtgctggagtacgcccgcggggaccggttgttcgtccccaccgac
cagctggaggagatcacccgctacgtgggcggggagtcccccaccctgcaccggctcggc
ggcgccgactgggccaagtccaaggccagggcgcgcaaggccgtccggcagatcgccggg
gagctgatccggctgtactcggcgcggatggccacccccggccacgccttcggccccgac
accccctggcagcgggagctggaggacgccttcccctacaccgagaccgccgaccagctc
gcggcgatcgaagaggtcaaggccgacatggaaaaaccggtcccgatggaccggctgatc
tgcggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaaggccatc
caggacggcaagcaggtggcggtgctggtgcccaccacgctgctggtgcagcagcacctg
tccaccttcgccgagcgcttcgcccccttcccggtggtggtcaaaccgctcagccgcttc
cagaccgacgccgaggtcgagcagaccctgcgcggcctggccgacggcaccgtggatctg
gtgatcggcacccaccggctgttttcggcgcaggcccgcttcaaggacctgggcctggtg
atcatcgatgaggagcagcggttcggggtcgagcacaaagaagagctcaagcggctgcgc
acccaggtggacgtgctggcgatgtcggccacccccatcccgcggacgctggagatgggc
ctgaccggcatccgggagatgtcgaccatcttgaccccgccggaggagcggcacccgatc
ctgaccttcgtcggcccgtacgacgacaagcagatcgccgccgccatccgccgcgagctg
ctgcgcgaagggcaggtgttcttcgtccacaaccgggtccgctccatcgaccgggtggcc
gccaagctcaaggagctggtccccgaggcgcgcatcgccaccgcccatggccagatgaac
gagcaccagctcgagaaggtcatggtggacttctgggagaagaactacgacgtgctggtg
gccaccaccatcgtcgagtccggcctggacatccccaacgccaacacgctgatcgtggac
cgcgccgacacctacggcctgtcgcagctgcaccagctgcgcggccgggtcggccggggc
cgcgaacgcggctacgcctacttcctgtacccgccggagagcccgctgagcgagaccgcg
cacgagcggctggccaccatcgcccagcacaccgagatgggcgccggcatgtacgtggcg
atgaaggatctggagatccgcggggccggcaacatcctgggcgtggagcagtccggccac
gtcgccggcgtcggcttcgacctgtatgtgcggatggtcggcgaggccgtccgcgagctg
aaggccaaggccggcggcgagcccgagccgccccagctgccggagaccaaggtggagctg
ccggtcgacgcgcacctgccgcacgactatgtgccgggggagcggctgcggctggacgcc
taccgcaggatcgccgccatcacctccgacgaggagatcgccgaggtgcgggatgagctg
accgaccgcttcggcgccccgccggagccggtgctcaacctgctggaggtcgcccggttc
cgggcccgcgcccgccgcgccgggctcaccgaggtcaccgtccagggcaaccacatcaag
ttcgccccggtggagctgccggactccaagcaggtgcggctgcagcggctgtaccccaag
agcatctacaaggccgctgcgcgtaccctgctggtgccggcgccgaagacggcgccgctg
ggcggccgcccgctgcgggacgtcgccctgctgaagtgggccaccgacctggtggaggca
atgttcgccgagcccgcgcgcacctag
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