Hydrogenovibrio crunogenus: Tcr_0105
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Entry
Tcr_0105 CDS
T00296
Name
(GenBank) Hypothetical protein with VCBS domains
KO
K20276
large repetitive protein
Organism
tcx
Hydrogenovibrio crunogenus
Pathway
tcx02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
tcx00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Tcr_0105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
Cadherin_5
Cadherin_4
CshA_repeat
Big_13
SCO1-SenC
Big_6
DUF4114
Collagen_bind
Cadherin_3
Big_3_5
Motif
Other DBs
NCBI-ProteinID:
ABB40701
UniProt:
Q31JH2
LinkDB
All DBs
Position
131416..136209
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AA seq
1597 aa
AA seq
DB search
MAEQNISTSVGKVILIEGNVYIKEVTGELIPLIEGMNVYAGQLIQTGPQSSILVELSNGE
VLSLGRNTLVRLDEDLIGSTDIDENQTTEEEIRKAIEAVQEGNFDALEETAAGQQNDLSS
AAQSADFIPPPRSEGEVTSGYDTGTFTTSRQTDNRGFDTVRFVEDIPQNDTPVAVNDTAT
LNEDASAIIDVLSNDSDLDGDSISVSSVTQPANGAVVINTDGTVTYTPNANYNGTDSFTY
TLSDGQGGTSTATVSLTVDPQNDTPVAVNDTATLNEDASAIIDVLSNDSDLDGDSISVSS
VTQPANGAVVINTDGTVTYTPNANYNGTDSFTYTLSDGQGGTSTATVSLTVDPQNDTPVA
VNDTATLNEDASAIIDVLSNDSDLDGDSISVSSVTQPANGAVVINTDGTVTYTPNANYNG
TDSFTYTLSDGQGGTSTATVSLTVDPQNDTPVAVNDTATLNEDASAIIDVLSNDSDLDGD
SISVSSVTQPANGAVVINTDGTVTYTPNANYNGTDSFTYTLSDGQGGTSTATVSLTVDPQ
NDTPVAVNDTATLNEDASAIIDVLSNDSDLDGDSISVSSVTQPANGAVVINTDGTVTYTP
NANYNGTDSFTYTLSDGQGGTSTATVSLTVDPQNDTPVAVAEIRNVLEDQVISGVISASD
ADLPSGEHLTFSTSSTVEGLTFNSDGSYTFDASGYDDLDQGEKQEIIVPVTVTDEQGAAT
ETSLTININGQNNDLTYVSESASYQNVIGIYEVGNDGKPVSGSIVLINQNGMQAGTHLAD
LDPEQDYEFFIMSNGAGNVSETDSITFDNSGDFPVLLVDGQPSVDPVYYTQPELNMDGKD
HFKFTLDGNGGTVISIEDLPNLGDADFGDVVLYTNFEMNNHIVVTSDVASESDSGISHTD
DITQDNTPIIQGNTESGAMVIISDVNGLTLGQARADAYGDYAIEISALADGTHEITVTAI
DGNGLSASTTQSITIDTQIESPVITNIIDHNGDYSNVTLYGTGEPGTTVTLFNKEGSTTN
GNQTNSSGFVPVATALPVIVDENGHWTVDISTLNNTPINDNEFFYATQQDIAGNVSAASN
TVHYWHGTWSNAESEAEDDFIMMGSGRDSAQLTSNDDNDHVVIDGGDGTDTVTFKGDYSD
FTVSTTAEGYTLVTESISSDSDANGVGDVNELRHIEFIKFDDGTYSVANQAFIPVDNEAS
MPEIELNIGEMVAVTQEGYQYDGDEARNANGHGHHTLSYDSYAEALDAQNGANHDNGSLV
YKNVNNAVWNLNDSNDKLFVVTQNANDAVINLAQGNNTIIFEKEPGKNIVINVGTGKDTL
VLSGQQNDYNLTALNDNNGILSGLITGPNNMSMTINNIDCIAFNDGSTIGDSSLYQGAGS
TAYFYPLEVEAELEDTDGSETLSNIQLTGLPDDGSVSVMGTGVTANQDGSYTIELLEDGS
ISEDVKLASNRELAEDELSDIHASVTAIEANGGDTATAEVNDAGDHFLYGLDNEDDVFII
ENEDDEQDSYIENFDIEHDVLDISDVISSEASEETLSNYLNLSLVDSDEDGQVDDTKISI
DRDGNAETQEDISTIYIQDNQLTDNNLDDMNIDFQND
NT seq
4794 nt
NT seq
+upstream
nt +downstream
nt
atggctgaacaaaatatttcaacgagtgtcggaaaagtcattctaattgaagggaacgtc
tatattaaagaagtgacaggcgaattgattcctttaattgaaggcatgaatgtctatgcc
ggtcagttgattcaaacaggacctcagagttcgattttggttgagttaagcaatggagag
gtgctttcattaggtcgaaatacattggttcgactggatgaagatttgattggttcaacc
gatatagacgaaaatcaaacaaccgaagaagagattcgaaaagccattgaagcggttcag
gaagggaattttgatgcgctagaagaaaccgcagcaggtcaacaaaatgatcttagttca
gccgcacaatcagccgactttattcctcctccgcgttcagagggtgaagtgaccagtgga
tatgacacaggtactttcaccacgtcaagacaaacagataatagagggtttgatacagtt
cgctttgttgaagacattccacaaaacgacaccccagtggcggtgaacgacacagcgacg
ttaaatgaagacgcgagtgcgatcatcgacgtgttgagcaatgacagcgacctagacggc
gacagcatcagtgtgtccagtgtgacgcaacctgcgaatggtgcggtggtcatcaacaca
gacggcaccgtgacctacacaccaaatgcgaactacaacggcacggacagcttcacctac
acgctaagcgatggccaaggaggcacgagcacagcgacggttagcctgacagttgatcca
caaaacgacaccccagtggcggtgaacgacacagcgacgttaaatgaagacgcgagtgcg
atcatcgacgtgttgagcaatgacagcgacctagacggcgacagcatcagtgtgtccagt
gtgacgcaacctgcgaatggtgcggtggtcatcaacacagacggcaccgtgacctacaca
ccaaatgcgaactacaacggcacggacagcttcacctacacgctaagcgatggccaagga
ggcacgagcacagcgacggttagcctgacagttgatccacaaaacgacaccccagtggcg
gtgaacgacacagcgacgttaaatgaagacgcgagtgcgatcatcgacgtgttgagcaat
gacagcgacctagacggcgacagcatcagtgtgtccagtgtgacgcaacctgcgaatggt
gcggtggtcatcaacacagacggcaccgtgacctacacaccaaatgcgaactacaacggc
acggacagcttcacctacacgctaagcgatggccaaggaggcacgagcacagcgacggtt
agcctgacagttgatccacaaaacgacaccccagtggcggtgaacgacacagcgacgtta
aatgaagacgcgagtgcgatcatcgacgtgttgagcaatgacagcgacctagacggcgac
agcatcagtgtgtccagtgtgacgcaacctgcgaatggtgcggtggtcatcaacacagac
ggcaccgtgacctacacaccaaatgcgaactacaacggcacggacagcttcacctacacg
ctaagcgatggccaaggaggcacgagcacagcgacggttagcctgacagttgatccacaa
aacgacaccccagtggcggtgaacgacacagcgacgttaaatgaagacgcgagtgcgatc
atcgacgtgttgagcaatgacagcgacctagacggcgacagcatcagtgtgtccagtgtg
acgcaacctgcgaatggtgcggtggtcatcaacacagacggcaccgtgacctacacacca
aatgcgaactacaacggcacggacagcttcacctacacgctaagcgatggccaaggaggc
acgagcacagcgacggttagcctgacagttgatccacaaaacgacaccccagtggcggtt
gcagagatccgtaacgtattggaagaccaggtaatttccggtgtaatcagtgcaagtgat
gctgatttaccatcgggtgaacatttaacattctctacttcttcaacagtagaaggtttg
acttttaatagtgacggttcttacacctttgatgcgtctggctatgatgatttggatcaa
ggtgagaaacaagaaattattgttcccgtaacggttaccgatgagcaaggcgcggcgacc
gaaactagtttgacgattaacattaacggtcagaataatgatttgacctatgtatctgaa
tcagcgtcttatcaaaatgtaattggtatttatgaagtaggtaatgatggtaaaccggta
agtggcagtatcgttttgattaatcagaatggtatgcaggcgggaacgcatctagccgat
ttggatccggaacaagattatgagttttttatcatgtcaaatggggctggcaatgtttcc
gaaacggatagcattacttttgataacagtggcgattttcctgtcttactggtagatggt
caaccttctgttgatccagtctattatactcagcctgaattgaatatggatggaaaagat
cactttaagtttaccttggatggtaacggtggcacggtgatcagcattgaagatttaccg
aaccttggggatgctgattttggcgatgtggtgttgtacaccaattttgaaatgaacaat
catatagtggtcacttcggatgtggcttcagagagcgattctggcatcagccataccgat
gatatcactcaagacaacactccgattattcagggtaataccgaatcgggtgcaatggtg
attatcagcgatgtcaacggattaacgttaggccaagccagagcggatgcttatggcgat
tatgccatcgaaatatcggctttagcagacggaacgcacgaaatcactgtgacagcgata
gatggcaatgggttatcggctagcacaacgcagtcgattacgattgacacacaaatcgag
tctcctgtgatcacgaatattatcgaccataacggggactattcaaacgtcaccctatat
ggtacgggagaacctggaacaacggttacactctttaataaagaaggctccacaacaaat
ggcaatcaaaccaattcgagtgggtttgttcctgtcgcaaccgcgctgcctgtcatcgtg
gacgaaaatgggcattggacggttgatatttcgaccctgaataatacgccaataaatgac
aatgaattcttttacgcaacgcaacaagacattgctggcaatgtcagtgcggcatcgaat
accgttcactattggcatggaacctggtccaatgcagagtctgaagccgaagatgacttc
attatgatgggatctgggcgtgattcggcgcaactgacctcaaatgatgataatgatcat
gtggtcattgatggcggagatggaacggatacagtgacctttaagggagactattcggat
ttcactgtttcaactacggctgagggatataccttggtaaccgaatccatttcttctgat
tccgatgcaaacggtgtcggagacgtgaatgaactgcgtcatattgaattcattaaattc
gatgatggtacttatagtgtggccaatcaagcatttattccagtcgataatgaagcttcc
atgcctgaaattgagctaaacattggtgagatggtcgccgtgacacaggaaggctaccag
tatgatggcgatgaggcacgaaatgcgaacggacatggacaccatacgttatcgtatgat
tcatatgccgaagcgcttgatgcacaaaatggtgccaatcatgataatggtagcttggtt
tataaaaatgtgaataacgctgtttggaacttaaatgattcaaacgataaattatttgtc
gtcactcagaatgcaaatgacgcggtgattaatttagcgcaaggcaacaatacgattatt
tttgaaaaagaaccgggtaaaaatattgtcatcaacgttggcacaggtaaagatacctta
gtcttgagcggtcagcaaaacgactataacttgacggcattgaatgataataatggcatt
ttgagtggtcttattaccggtcctaataacatgagtatgaccattaataacattgattgt
attgcctttaacgacggttcaacgattggagacagcagcttataccaaggagctggcagt
acagcctatttctatcctttggaggttgaagcggagctggaagataccgatggttcagaa
accctgtccaatattcaattaaccggcttgcccgacgatggttctgtttcagtgatggga
accggggtgaccgcgaatcaagatggtagctatacgatagaactgttggaagatggttcc
atttcggaagatgtaaaactggcctctaaccgagaactggcggaggatgagttatcggat
atccatgcttctgtaactgcgattgaagctaatggcggtgacaccgcaacggctgaggtg
aatgatgctggcgatcacttcttgtacggtttggataatgaagatgatgtgtttattatc
gagaatgaagatgatgaacaggatagttatattgagaactttgacattgaacacgatgtg
ctcgatatcagtgatgtcattagttctgaagcgtcagaagagaccttatctaattatttg
aatctatccttggtcgattccgatgaagacggtcaggttgacgatacgaaaatttcaata
gatcgcgatggtaacgctgaaacccaagaagatatcagcactatttatattcaggataat
cagcttactgacaacaatctggatgatatgaatatcgactttcaaaatgactag
DBGET
integrated database retrieval system
