Thiomicrospira cyclica: Thicy_0722
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Entry
Thicy_0722 CDS
T01517
Name
(GenBank) phosphoesterase RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tcy
Thiomicrospira cyclica
Pathway
tcy03410
Base excision repair
tcy03430
Mismatch repair
tcy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Thicy_0722
03430 Mismatch repair
Thicy_0722
03440 Homologous recombination
Thicy_0722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcy03400
]
Thicy_0722
DNA repair and recombination proteins [BR:
tcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Thicy_0722
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Thicy_0722
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Thicy_0722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DUF2529
Motif
Other DBs
NCBI-ProteinID:
AEG31494
UniProt:
F6DCA8
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All DBs
Position
complement(870875..872680)
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AA seq
601 aa
AA seq
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MTIAYAPTIAIQQRAFDQAIYEHALAEGHSPLTARLLAQRLNQQDLAQSQQPLLSFWVKP
QLKHLQHPADLKNIDQAAQLIARAIQSDGLIVLATDYDTDGVTSAWIGYHSLTQYLGVDP
NRVVCIISKRADGYGLTQELCERIVALDQPIDLVISADQGSSDEPQIAYLAERGIAVCVT
DHHQIPVAGPPTSAASIVNPQLDGCGYDKQICGCFVLFLVMSHVRQTLISQGLLAPDSPN
LRPLLHQVALGTIADSVSLKSVNNRAVVKAGLLQMNQFIHPIWQAVQQAHPQKPNQLTAE
FIAFQIASRINAASRVNDVQNAFRFINASNLAEALDAFAQLDRDNAMRQQQQTAMMAAAI
EQAQAQLADNPFCIVIALEGNPGIQGIIAARIGERYGLPCIALTQLNDQEYAGSGRAIVE
DVDLITVFNAIDEQHPNLFISKGGHKAAVGCQIPLTALTLFRKKMNQLIAEQLHFQRPRL
TLPSDGELTPEQLNLTTLADIDALEPYGRDWPSPRFNGHFSLVGWRCVGKDAQHLSLKLQ
TQAQGEMLNAIFFNPADRVIEQIMSLNEGKTPTIECLYQLQCNSFMGRSQLQLRLDYLRL
I
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgactattgcctacgcgccaactatcgctattcaacaacgtgcttttgatcaagccatc
tatgagcatgcgctcgctgaaggtcacagtccactgactgcgcgattgctggcccagcgg
cttaatcaacaggatctagcgcaaagccagcaacccttacttagcttttgggtcaagccg
caactcaagcatttacaacaccctgcggatttaaaaaacatcgatcaggcggcacagttg
attgcacgcgcaattcaatccgatggtttaattgtgctggcaacagattatgataccgat
ggtgtcacttcggcatggattggctatcacagtctaacccaatatttaggcgttgatcct
aatcgggtcgtttgtattatttcaaaacgtgccgatggttacggactcacccaagagctc
tgtgagcgaattgtggcactggaccaaccgattgacttggtgatttcggccgaccaaggc
tccagcgatgaaccacaaattgcctatctcgccgaacgagggattgccgtatgtgtgaca
gaccatcatcaaattccggtggcaggtccacccacaagtgccgccagtatcgttaatcca
caattagatggctgtggttatgacaaacagatttgtggctgttttgtgttatttttagtc
atgtcccatgttagacaaacgcttatttcgcaaggcttattggcgccagactcaccaaat
ttacgcccactacttcatcaagtagccttaggaacgattgcagatagtgtgagtttaaaa
agcgtcaataaccgggccgtggttaaagcaggtctgctacaaatgaatcaatttatccat
ccgatatggcaggctgtccagcaagcacacccccaaaaacccaatcaacttaccgccgag
tttattgcgtttcaaattgcctcacgcatcaatgcagcctctcgcgtaaacgatgtccaa
aatgcctttcgttttattaatgccagtaatctcgctgaagcgttagatgcctttgcacag
cttgaccgtgataacgccatgcgccaacaacaacaaacggccatgatggcagcggctatt
gaacaagcgcaagcacaattagccgataatcctttttgcattgtcattgccttagaaggc
aacccaggaattcaaggtattatcgcggcacgcattggcgaacgctatggcctcccttgt
attgcactcactcaactcaacgatcaagaatatgccggtagtgggcgcgcaattgttgaa
gatgtcgatttaattactgtgtttaatgccattgatgagcaacacccgaacctatttatt
agcaaagggggtcacaaagcggccgttggctgtcaaattccgctcacagcactgacactc
tttcgcaaaaagatgaatcaactcattgccgagcaattacattttcagcgtccgcgccta
acgcttcctagcgatggtgagttgactcccgaacagcttaatctaaccacattagccgat
attgatgcactggaaccctatggccgagattggccaagcccccgtttcaatggtcatttc
agtcttgttggctggcgctgcgttggcaaagatgctcaacacctgagtttaaaactacaa
actcaggcgcagggcgaaatgctcaatgcgatattttttaatcctgccgaccgagttatt
gaacaaataatgagtctaaatgagggcaaaacaccaacaattgaatgcctgtatcaattg
caatgcaacagctttatggggcgcagccaacttcaactgcgtttggattacctgcgtctg
atctaa
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