Thiomicrospira cyclica: Thicy_1456
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Entry
Thicy_1456 CDS
T01517
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tcy
Thiomicrospira cyclica
Pathway
tcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thicy_1456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcy03019
]
Thicy_1456
03009 Ribosome biogenesis [BR:
tcy03009
]
Thicy_1456
Enzymes [BR:
tcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Thicy_1456
Messenger RNA biogenesis [BR:
tcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Thicy_1456
Ribosome biogenesis [BR:
tcy03009
]
Prokaryotic type
rRNA helicases
Thicy_1456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
UvrA_inter
DUF6352
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AEG32216
UniProt:
F6DA85
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All DBs
Position
1680758..1682557
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AA seq
599 aa
AA seq
DB search
MSETIQDVTFESFNLIPQVLKALQDVGYETPSPIQAQAIPPILEGRDILGMAQTGTGKTA
AFALPLLSRVDIQNTNTQILVLAPTRELAIQVAEAFQSFAHHMKGFHVLPIYGGQEYGGQ
IRALKRGAQVVVGTPGRVMDHMRKGTLKLDNLQALVLDEADEMLRMGFIDDVEWVLEQTP
QDRQIALFSATMPKEVHKIASKHLNNPVEVIIKQKTGTASTISQSYWLVSGLHKLDALTR
ILEATEFDGMIIFVRTKTATIELAEKLEARGYAAAALNGDIAQNHRERIVDQLKKGKIDI
LIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFVAPRERRLLQ
QIERATNKKIDMLTLPSTQDINDQRVEKFKARITDALEQEGLEFYQQMIEDLQQSSNVPA
LEIAAALAKLAQGDAPFFLEDKPIRQASFRDDDRGSRGARDFGRDRPARGRGERGDRTER
APRRPRVDGPPESGMKRYRINVGFANGVKPGNIIGAIANEANIDGASIRQLNIQDGFSLV
DLPADLSKAQLATLKKTWICGQPADLTEVRDTAATPGARPKLSRKPAGAPRTKRSMGSV
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaactatccaagatgtaacattcgaaagctttaacctgatcccacaagtattg
aaagccttacaagatgtgggctatgaaaccccgtcaccgattcaagcacaagcgattccc
cctattttagaaggccgtgatattttaggtatggcgcaaaccggtaccggtaaaaccgct
gcttttgcgctacctttgctatcacgtgttgatattcaaaacaccaacacccaaatttta
gttttagcgccaacccgtgaactggcgattcaggtggctgaggctttccaaagctttgcc
catcatatgaaaggttttcatgtactgccgatttacggtggtcaagagtatggcggtcaa
attcgcgcacttaaacgtggcgcacaagtggttgtcggcacgccaggtcgcgtaatggat
cacatgcgcaaaggcacacttaagcttgataatctgcaagccttagtcttagacgaagcc
gatgaaatgctacgcatgggttttattgatgatgttgaatgggtactagagcaaacgcca
caagatcgtcaaattgccttgttctcagcgaccatgccaaaagaagttcataagattgcc
agcaagcatttaaacaatccggttgaagtgattatcaaacaaaaaaccggcaccgcctca
acgattagccagtcttattggttggtcagtggtttacacaaattagatgcgctaacccgg
atcttagaagccaccgagtttgatggcatgattatttttgtgcgcactaaaaccgctacc
attgaattggctgaaaaactcgaagctcgtggttatgccgccgccgccttaaatggtgac
attgcgcagaatcaccgtgagcgtattgttgaccagcttaaaaaaggcaaaattgatatt
ttgattgcaaccgacgtggtcgcacgtggtcttgacgttgagcgtattacccacgtggtg
aactatgacattccatatgataccgaaagctatgttcaccgtatcggtcgtaccggtcgt
gctggccgctctggtaatgcgattttgtttgttgcaccacgtgaacgccgtttgttacaa
caaattgagcgtgcgactaacaaaaaaattgatatgttaacgctaccaagcacccaagat
atcaacgatcaacgcgttgaaaagtttaaggcgcgcattaccgatgccctcgagcaagaa
ggtttggaattctatcaacaaatgattgaagacctccagcaatcatcgaatgttccagca
ttagaaattgccgccgccttagcaaaactggctcagggtgatgcacctttcttcttagaa
gataagccaattcgtcaagccagcttccgtgatgacgatcggggctcacgtggggcgcgc
gactttggacgtgatcgtccagcccgtggccgtggcgagcgcggtgatcgtacagaacgc
gcaccacgtcgcccacgcgtagacggcccacctgagtctggcatgaagcgttaccgcatt
aatgttggttttgccaatggcgttaagccaggcaatattattggcgcgattgccaatgaa
gcgaatattgatggcgcatcgattcgtcagttgaatattcaggatggctttagcctagtt
gatttgccagctgatttatcgaaagcgcaattagcgacactgaagaaaacctggatttgt
ggccaacctgccgatttaacggaagttcgtgacaccgctgcgacaccgggtgcgcgtcca
aagttgagccgcaagccagctggcgctccacgcactaagcgtagcatgggttcggtttaa
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