Teleopsis dalmanni (Malaysian stalk-eyed fly): 119672009
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Entry
119672009 CDS
T09311
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tda
Teleopsis dalmanni (Malaysian stalk-eyed fly)
Pathway
tda03013
Nucleocytoplasmic transport
tda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tda00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119672009
03015 mRNA surveillance pathway
119672009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tda03019
]
119672009
Enzymes [BR:
tda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119672009
5.6.2.5 RNA 5'-3' helicase
119672009
Messenger RNA biogenesis [BR:
tda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119672009
mRNA cycle factors
Common to processing body (P body) and stress granule
119672009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
Helicase_RecD
DEAD
SLFN-g3_helicase
UvrD-helicase
ATPase
AAA_16
AAA_22
nSTAND3
SRP54
zf-B_box
Motif
Other DBs
NCBI-GeneID:
119672009
NCBI-ProteinID:
XP_037938883
LinkDB
All DBs
Position
1:complement(215749905..215755138)
Genome browser
AA seq
1177 aa
AA seq
DB search
MTKSTKNNKKKSATMSVDAAFGPSSQTLTFLDTEENDLIGADTQASDFDFRDFTLPSQSQ
ISQQDPLPSVAGSSGHPFGRKIELPNKLSTITNGLAELQFEEEDEETSLTSVKELPPHAC
KYCGIHDKETVVMCNNCKKWFCNGRGSTSGSHIINHLVRAKHREVTLHSDGPLGETVLEC
YSCGVRNVFLLGFIPAKADSVVVLLCRQPCAAQNSLKDLNWEQDQWKPLISDRCFLSWLV
KTPSEQEQLRARQISAAQINKLEELWKENIDATFQDLEKPGIDTEPAQVLMRYEDGYQYE
KILGPLVRLEADYDKKLKESQTQENIEVRWDIGLNKKNIAYFTLAKTDSDMKLMHGDELR
LRYVGEMHKAWSEVGHVIKVPDNYGDDIGLELKASPDAPVKCTSNFAVDFIWKSTSFTRM
TRALKLFAMDRNSVSNFIYSRLLGHGRQDGNDEVLFRSQPPKLYTAPNLPDLNRSQVYAV
KHALQRPLSLIQGPPGTGKTVTSATIVYQLVKQHGGPILVCAPSNTAVDQLTEKIHLTNL
KAVRVCAKSRESIDSPVSFLALHNQIRCMETNSELKKLQQLKDETGELSSADEKRYRSLK
RGAENQLLEAADVICCTCVGAGDARLARIKFSSILIDESMQSTEPECMVPVVLGAKQLIL
VGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEG
SLQNGVCAEDRKLKIDFPWPQPDRPMFFLVTQGQEEIAGSGTSYLNRTEAANVEKITTRF
LKAGVRPEQIGIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDLIIMS
CVRSNERQGIGFLNDPRRLNVALTRSKYGTIIVGNPKVLSKQALWNHLLNFYKDRKVLVE
GSLNNLKESLIQFQKPKKIVNTLNMGAHFMNTIMANAKEVIVPGSVYDRTSNYGISSGPS
NLPGNSFGLGFNTGMGGGNFNSNQGMLMSQNYMTGPSYSGGRVPVGNATQNAVSNYQQWG
NQHDSISYVSPERVRATLNNMPVPVGMFMNMGNMPRRFYNQQAVQAAVKQGRNGGGNGQT
KTNGSNGSTRNQQGGKGRPILANSFTSVISQASASPLTQNMSQHGGFALSQQPDLSQDFG
QISQIDVLSQDISGAQLQSDRLSLGFNSQSQLTQPPY
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaagcactaaaaataataaaaaaaagtccgccacgatgagtgtagatgcagca
ttcggtccaagttctcagactctgaccttccttgacactgaggaaaatgatttaattggt
gcggatacacaagcatctgattttgattttcgcgattttactttaccatctcagtctcaa
atatctcaacaagatcctttaccaagtgtagcaggttctagcggccacccattcggtcga
aaaatagaattgcccaataagttgagtacaattactaatggattggctgaattacagttt
gaagaagaagatgaggaaacttctcttacatctgttaaggaattgccaccacatgcctgc
aaatattgtggcatccacgacaaggaaacggtagtcatgtgcaataactgtaaaaagtgg
ttttgtaatggtcgaggcagtacatctggttcccatatcattaatcacttagtacgtgct
aaacatcgtgaagtcaccttgcactcagacgggccattaggcgaaacagtcttggagtgt
tattcttgtggtgttcgtaatgtgtttctactaggatttataccagctaaagcagattct
gtagttgttttactatgtcgacaaccatgtgctgcacaaaattcattgaaagatttaaat
tgggaacaagatcaatggaaacctcttatatctgatcgttgttttttgtcatggctagtt
aaaacaccaagcgagcaagaacagttacgagcacgtcaaatatcagcagcacaaattaat
aagctagaagaattatggaaagaaaatattgatgccacctttcaagatttagagaagcct
ggaattgacactgaaccagcacaagtgttaatgcgttacgaagatggttatcagtacgaa
aaaattttaggaccgctcgtacgtctcgaagctgactacgataagaaacttaaagaatcc
caaactcaggaaaatattgaagttcgttgggatattggtctaaataaaaaaaatattgct
tactttacgttggcaaaaactgactctgatatgaaattaatgcatggtgatgagttgcgt
ttaagatatgttggagagatgcataaagcatggagcgaagttgggcatgttattaaagtg
cctgataattatggcgatgatattggtttagaattgaaagcatcacccgatgctccagtt
aaatgcacttcgaattttgccgtcgacttcatttggaaaagtacttcattcactcgtatg
actcgtgcattaaaattatttgcaatggatcgcaattctgtttctaactttatatactct
cgtttattgggtcatggtcgtcaagatggcaatgatgaagttctatttcggtcacaacca
cccaaactttatactgctcctaatctccccgacctaaaccgttcgcaagtgtatgcagtg
aaacatgctttacaacgtccacttagtttaattcaaggaccgcctggcacaggaaaaact
gttacttctgctactatagtgtatcagttggttaaacaacatggtggacccatattggtt
tgtgctcctagtaatactgcagtagatcagctaacagaaaagatacatttaactaatctg
aaagcagtacgtgtgtgtgctaaatctagagaatctattgatagtccagtcagcttttta
gctttacataatcagattcgttgcatggaaactaattctgagttgaaaaaattgcaacaa
ttaaaagatgaaactggtgagcttagttcggctgatgaaaagcgttatcgtagcttaaaa
cgtggagctgaaaatcaattacttgaagctgccgatgtaatttgttgcacttgcgtagga
gcaggtgatgcgcgcttagcacgaattaagttttcgtctatacttattgatgagtctatg
caatcaacagaaccggaatgtatggtgccagtagtattaggtgcaaaacaattaatacta
gtcggtgatcattgccaactaggaccagttgttatgtgtaaaaaagcggcacgtgctggt
ctatcacaaagtttgtttgaaagattggttgtgctgggtattagaccattccgtttagaa
gtacaatatcgtatgcatcctgagctttcacaatttccgtctaacttcttttatgagggt
tccttgcaaaatggtgtatgtgcagaagatcggaaacttaaaattgattttccttggcct
caaccggatagaccaatgtttttcttagttactcaaggtcaggaggaaattgctggttcc
ggaacttcttacttaaatcgcactgaagctgcaaatgttgaaaaaattacaacacgattc
cttaaagcaggtgttagaccagagcaaattggtattataacaccatatgaaggtcagaga
gcttacctagtacaatatatgcaataccaaggtagtttacattcaaaactctatcaagaa
attgaaatagccagtgtagacgcttttcaaggtagagaaaaagatttgattataatgtcg
tgcgtacgttccaatgaaagacaaggtatcggtttcttaaatgatcctcgtcgtttgaat
gttgctttgactcgttccaagtatggcacaattattgttggaaacccgaaagttttatca
aaacaagcattgtggaatcatttgttaaatttttacaaggatcgcaaagtacttgttgaa
ggttccttgaacaatttgaaggagtctttaatacaatttcaaaaaccgaagaaaattgtt
aatacacttaatatgggtgcacactttatgaatacaataatggcaaatgcaaaagaagtt
attgtacctggatctgtatacgacagaactagcaattatggtattagtagtggtccaagt
aatttacctggcaacagttttggtttgggtttcaatactggtatgggtggtggaaacttt
aactcaaatcagggtatgttgatgtcacaaaattatatgacaggacctagctattcaggc
ggacgtgttcctgttggcaacgccacacaaaatgctgtatccaattatcaacagtggggc
aatcaacatgattctattagttatgtttccccagaacgtgtgcgtgcaactttgaataat
atgcccgtacctgttggtatgtttatgaatatgggaaatatgcctcgtcgcttttataat
caacaagcggtgcaagctgctgtaaaacaaggacgaaacggtggtggtaacgggcagact
aaaactaatggttctaacggttctactaggaaccaacagggtggcaaaggacgtcccatt
ttggccaacagttttacaagcgttatatcacaagctagtgcgtcaccacttactcaaaat
atgtcccaacacggtggattcgccctatcgcaacaaccggatctttctcaagattttgga
caaatttcccaaatagatgtgttatctcaagatatatcaggagctcagctacagagtgat
cgtctaagtttgggctttaacagccaaagccaattgactcaaccgccttattga
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