Teleopsis dalmanni (Malaysian stalk-eyed fly): 119672705
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Entry
119672705 CDS
T09311
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tda
Teleopsis dalmanni (Malaysian stalk-eyed fly)
Pathway
tda03013
Nucleocytoplasmic transport
tda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tda00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119672705
03015 mRNA surveillance pathway
119672705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tda03019
]
119672705
Enzymes [BR:
tda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119672705
5.6.2.5 RNA 5'-3' helicase
119672705
Messenger RNA biogenesis [BR:
tda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119672705
mRNA cycle factors
Common to processing body (P body) and stress granule
119672705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
Helicase_RecD
DEAD
SLFN-g3_helicase
UvrD-helicase
ATPase
AAA_16
AAA_22
nSTAND3
SRP54
zf-B_box
Motif
Other DBs
NCBI-GeneID:
119672705
NCBI-ProteinID:
XP_037939749
LinkDB
All DBs
Position
1:complement(234304516..234309840)
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AA seq
1175 aa
AA seq
DB search
MEAKNNKKKSATMSVDAAFGPSSQTLTFLDTEENDLIGADTQASDFDFRDFTLPSQSQIS
QQDPLPSVAGSSGHPFGRKIELPNKLSTITNGLAELQFEEEDEETSLTSVKELPPHACKY
CGIHDKETVVMCNNCKKWFCNGRGSTSGSHIINHLVRAKHREVTLHSDGPLGETVLECYS
CGVRNVFLLGFIPAKADSVVVLLCRQPCAAQNSLKDLNWEQDQWKPLISDRCFLSWLVKT
PSEQEQLRARQISAAQINKLEELWKENIDATFQDLEKPGIDTEPAQVLMRYEDGYQYEKI
LGPLVRLEADYDKKLKESQTQENIEVRWDIGLNKKNIAYFTLAKTDSDMKLMHGDELRLR
YVGEMHKAWSEVGHVIKVPDNYGDDIGLELKASPDAPVKCTSNFAVDFIWKSTSFTRMTR
ALKLFAMDRNSVSNFIYSRLLGHGRQDGNDEVLFRSQPPKLYTAPNLPDLNRSQVYAVKH
ALQRPLSLIQGPPGTGKTVTSATIVYQLVKQHGGPILVCAPSNTAVDQLTEKIHLTNLKA
VRVCAKSRESIDSPVSFLALHNQIRCMETNSELKKLQQLKDETGELSSADEKRYRSLKRG
AENQLLEAADVICCTCVGAGDARLARIKFSSILIDESMQSTEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSL
QNGVCAEDRKLKIDFPWPQPDRPMFFLVTQGQEEIAGSGTSYLNRTEAANVEKITTRFLK
AGVRPEQIGIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDLIIMSCV
RSNERQGIGFLNDPRRLNVALTRSKYGTIIVGNPKVLSKQALWNHLLNFYKDRKVLVEGS
LNNLKESLIQFQKPKKIVNTLNMGAHFMNTIMANAKEVIVPGSVYDRTSNYGISSGPSNL
PGNSFGLGFNTGMGGGNFNSNQGMLMSQNYMTGPSYSGGRVPVGNATQNAVSNYQQWGNQ
HDSISYVSPERVRATLNNMPVPVGMFMNMGNMPRRFYNQQAVQAAVKQGRNGGGNGQTKT
NGSNGSTRNQQGGKGRPILANSFTSVISQASASPLTQNMSQHGGFALSQQPDLSQDFGQI
SQIDVLSQDISGAQLQSDRLSLGFNSQSQLTQPPY
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggaagctaaaaataataaaaaaaagtccgccacgatgagtgtagatgcagcattcggt
ccaagttctcagactctgaccttccttgacactgaggaaaatgatttaattggtgcggat
acacaagcatctgattttgattttcgcgattttactttaccatctcagtctcaaatatct
caacaagatcctttaccaagtgtagcaggttctagcggccacccattcggtcgaaaaata
gaattgcccaataagttgagtacaattactaatggattggctgaattacagtttgaagaa
gaagatgaggaaacttctcttacatctgttaaggaattgccaccacatgcctgcaaatat
tgtggcatccacgacaaggaaacggtagtcatgtgcaataactgtaaaaagtggttttgt
aatggtcgaggcagtacatctggttcccatatcattaatcacttagtacgtgctaaacat
cgtgaagtcaccctgcactcagacgggccattaggcgaaacagtcttggagtgttattct
tgtggtgttcgtaatgtgtttctactaggatttataccagctaaagcagattctgtagtt
gttttactatgtcgacaaccatgtgctgcacaaaattcattgaaagatttaaattgggaa
caagatcaatggaaacctcttatatctgatcgttgttttttgtcatggctagttaaaaca
ccaagcgagcaagaacagttacgagcacgtcaaatatcagcagcacaaattaataagcta
gaagaattatggaaagaaaatattgatgccacctttcaagatttagagaagcctggaatt
gacactgaaccagcacaagtgttaatgcgttacgaagatggttatcagtacgaaaaaatt
ttaggaccgctcgtacgtctcgaagctgactacgataagaaacttaaagaatcccaaact
caggaaaatattgaagttcgttgggatattggtctaaataaaaaaaatattgcttacttt
acgttggcaaaaactgactctgatatgaaattaatgcatggtgatgagttgcgtttaaga
tatgttggagagatgcataaagcatggagcgaagttgggcatgttattaaagtgcctgat
aattatggcgatgatattggtttagaattgaaagcatcacccgatgctccagttaaatgc
acttcgaattttgccgtcgacttcatttggaaaagtacttcattcactcgtatgactcgt
gcattaaaattatttgcaatggatcgcaattctgtttctaactttatatactctcgttta
ttgggtcatggtcgtcaagatggcaatgatgaagttctatttcggtcacaaccacccaaa
ctttacactgctcctaatctccccgacctaaaccgttcgcaagtgtatgcagtgaaacat
gctttacaacgtccacttagtttaattcaaggaccgcctggcacaggaaaaactgttact
tctgctactatagtgtatcagttggttaaacaacatggtggacccatattggtttgtgct
cctagtaataccgcagtagatcagctaacagaaaagatacatttaactaatctgaaagca
gtacgtgtgtgtgctaaatcgagagaatctattgatagtccagtcagctttttagcttta
cataatcaaattcgttgcatggaaactaattctgagttgaaaaaattgcaacaattaaaa
gatgaaactggtgagcttagttcagctgatgaaaagcgttatcgtagcttaaaacgtgga
gctgaaaatcaattacttgaagctgccgatgtaatttgttgcacttgcgtaggagcaggt
gatgcgcgcttagcacgaattaagttctcgtctatacttattgatgagtctatgcaatca
acagaaccggaatgtatggtgccagttgtattaggtgcaaaacaattaatactagtcggt
gatcattgccaactaggaccagttgttatgtgtaaaaaagcggcacgtgctggtctatca
caaagtttgtttgaaagattggttgtgctgggtattagaccattccgtttagaagtacaa
tatcgtatgcatcctgagctttcacaatttccgtctaacttcttttatgagggttccttg
caaaatggtgtatgtgcagaagatcggaaacttaaaattgattttccttggcctcaaccg
gatagaccaatgtttttcctagttactcaaggtcaggaagaaattgctggttccggaact
tcttacttaaatcgcactgaagctgcaaatgttgaaaaaattacaacacgattccttaaa
gcaggtgttagaccagagcaaattggtattataacaccatatgaaggtcagagagcttac
ctagtacaatatatgcaataccaaggtagtttacattcaaaactctatcaagaaattgaa
atagccagtgtagacgcttttcaaggtagagaaaaagatttgattataatgtcgtgcgta
cgttccaatgaaagacaaggtattggtttcttaaatgatcctcgtcgtttgaatgttgct
ttaactcgttccaagtatggcacaattattgttggaaacccgaaagttttatcaaaacaa
gcattgtggaatcatttgttaaatttctacaaggatcgcaaagtacttgttgaaggttcc
ttgaacaatttgaaggagtctttaatacaatttcaaaaaccgaagaaaattgttaataca
cttaatatgggtgcacactttatgaatacaataatggcaaatgcaaaagaagttattgta
cctggatctgtatacgacagaactagcaattatggtattagtagtggtccaagtaattta
cctggcaatagttttggtttgggtttcaatactggtatgggtggtggaaactttaactca
aatcagggtatgttgatgtcacaaaattatatgacaggacctagctattcaggcggacgt
gttcctgttggcaacgccacacaaaatgctgtatccaattatcaacagtggggcaatcaa
catgattctattagttatgtttccccagaacgtgtgcgtgcaactttgaataatatgccc
gtacctgttggtatgtttatgaatatgggaaatatgcctcgtcgcttttataatcaacaa
gcggtgcaagctgctgtaaaacaaggacgaaacggtggtggtaatgggcagactaaaact
aatggttctaacggttctactaggaaccagcagggtggcaaaggacgtcccattttggcc
aatagttttacaagcgttatatcacaagctagtgcgtcaccacttactcaaaatatgtcc
cagcacggtggattcgccctatcgcaacaaccggatctttctcaagattttggacaaatt
tcccaaatagatgttttatctcaagatatatcaggagctcagctacagagtgatcgtcta
agtttgggctttaacagccaaagccaattgactcaaccgccttattga
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