Triticum dicoccoides (wild emmer wheat): 119280498
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Entry
119280498 CDS
T07278
Name
(RefSeq) probable polygalacturonase At1g80170
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc00040
Pentose and glucuronate interconversions
tdc01100
Metabolic pathways
Module
tdc_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
119280498
Enzymes [BR:
tdc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
119280498
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Gene cluster
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Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Motif
Other DBs
NCBI-GeneID:
119280498
NCBI-ProteinID:
XP_037417225
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Position
3B:complement(12766955..12769101)
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AA seq
443 aa
AA seq
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MALRARTRLLLAALAGAVALLLPGGAVEARVLLSLDDFGAVGDGIANDTQAFVDAWKSAC
ATGGTTYLNVPAGRSYQIWPVTLAGPCRGEIKLLISGNIIAPEDPEEWWDGDQGRWLHFR
GVGDLSLSGGGIVDGRGQQWWAGSCEDENCTTYRPYDVAPMALHFEGCRDVSVKGITVQN
GQRQHLVFTRCHDVEANYLRVTSPEYSPGTVGVLVVSSTDVHIKHDLFSVGGDCVSIVGN
SSDIRVKAVSCGPGLGISIGGLGENQSNDRIHKIKMDTMLLSNTKNGVRIKTYKNGCGFA
RKVKFAHIMMRNVANPIVIDQHYYSASNSNRGTPCGTPNVSAVAVEKIKYIDITGTSATE
RAVTFACSDAMPCRRLYLDGVNLKTAGGGSTSAYCHQAFGKHVGDVLPESCLIKEKEDKF
IQLHAPTAGTPQGDTEDEEDDDL
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttcgtgcaaggacgcggctcctgctcgcggctctcgccggcgccgtggccctc
ctgctgccgggcggcgccgtcgaggcccgcgtcctgctctcgctcgacgacttcggcgcc
gtcggggacggcattgccaacgacactcaggcattcgtggacgcgtggaagtcggcgtgc
gccaccggcggaaccacctacctcaacgtccccgccggcaggtcctaccagatctggccc
gtcacgctcgccggcccctgccgcggcgagatcaagctcttgatttccgggaacatcatc
gcgccggaggacccggaggagtggtgggacggtgaccagggcaggtggctccacttccgg
ggcgtgggcgacctgtccctgagcggcggtggcatcgtcgacggccggggccagcaatgg
tgggcggggtcgtgcgaggacgagaactgcaccacgtaccgcccatacgatgtcgccccc
atggcgctccacttcgagggctgccgggacgtgagcgtgaagggcatcacggtgcagaac
ggccagcggcagcacctggtcttcacccgctgccacgacgtcgaggccaactatctcagg
gtgacctcgccggagtacagccccggcaccgtcggcgtcctcgtcgtcagctccaccgac
gtgcacatcaagcacgatctcttctccgtaggtggcgactgcgtgtcgatcgtgggcaac
tcctcggatatccgcgtgaaagccgtctcatgcggacctggcctcggcatcagcattgga
ggcttgggcgagaaccaaagtaatgacaggatacacaagatcaagatggacactatgctc
ctctccaacaccaagaacggcgtacgcatcaagacctacaagaacggctgcggcttcgcg
cgcaaggtgaagttcgcgcacatcatgatgaggaacgtggccaaccctatcgtcatcgac
cagcactactactccgcctccaactccaaccggggaactccctgcggaaccccgaacgtg
agcgcggtggcggtggagaagatcaagtacatagacatcaccggcacttcggcaacggag
cgggcggtcacgttcgcgtgcagcgacgccatgccgtgcaggcgcctgtatctggacggg
gtgaacctgaagacggccggcggggggagcacgtccgcctactgccaccaggcgttcggg
aagcacgtcggcgacgtcctcccggagtcgtgcctcatcaaggagaaggaggacaaattt
atccagctgcatgccccgaccgccggcacgccgcaaggagacaccgaagacgaagaagat
gatgatttgtga
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