Triticum dicoccoides (wild emmer wheat): 119310997
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Entry
119310997 CDS
T07278
Name
(RefSeq) THO complex subunit 1-like isoform X1
KO
K12878
THO complex subunit 1
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03013
Nucleocytoplasmic transport
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119310997
09122 Translation
03013 Nucleocytoplasmic transport
119310997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119310997
03041 Spliceosome [BR:
tdc03041
]
119310997
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
119310997
Spliceosome [BR:
tdc03041
]
Complex C
Other components
EJC/TREX
119310997
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119310997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
HSM3_N
NRBF2
Motif
Other DBs
NCBI-GeneID:
119310997
NCBI-ProteinID:
XP_037442520
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All DBs
Position
5B:complement(483268235..483285938)
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AA seq
560 aa
AA seq
DB search
MLAVQFCIYRRKWCPLPQSPSLRPARGGDPVSPLLHHGVALALAAAVQFGPPYTPHQGPT
ARPVPVPARSRLQPRRPRPHHRSVPERAVQGRIPGSFRPPGAPGSNQASEANGAGSRGEP
VLGECSPEAAAGTCLQSGKGVMQCGNSVDSGESSCMITRLLDMMLYLCERGHVEAGMVFQ
LLEDLTDMSTIKDCKHVFGYIESKQDVLGKQELFRRGKLVMLRTCNQLLQRLSKSNDVVF
RGRIIMFLAHFFPLSERSALNIKGVFNISNETKYEKDPTAGISVDFNFYQTLWSLQEHFR
NPASTTTNPTKWQKFASNLMVVLSTFESQTLCSADGKHNNTEQEGDAASNIKYLTSSKLM
ALELKDASFRCHILVQCLIFFDCLKAPGKSDKEGPSESMKEEIKSCEERVKNLLEMIPQK
GREFLRSIEHIVERERNWVWWKRDGCPAFEKQTFEKKSGQAGVRKRNPRWRLGNKELAQL
WKWAELNPTALTDPDRVRTPSVREYWKPLAEDMDTSAGIEEEYHHKSNRVYCWKGLRFQA
RQDLEGFSRFCEDGIEGVVP
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgttggccgtgcaattctgcatataccgccggaaatggtgcccccttccccaatccccg
tccttgcgccctgcccgcggtggtgatccagtgagccccctcctccaccatggcgtcgcc
ctcgccctcgccgccgccgtccaattcgggcctccgtacacgcctcaccaaggaccgacc
gcccgccccgtccccgtccccgctcgcagccgtctccagccacgccgaccgcgaccgcat
catcggagtgttccggagcgcgctgtgcagggccgaatccccggaagctttcgccctcca
ggcgctccaggaagcaatcaagcctcagaagcaaacggtgctggttctagaggagaacca
gtacttggagaatgctctccggaggctgctgcaggaacttgtcttcaatctggtaaagga
gtcatgcaatgtggaaactcagtggatagcggagaaagtagttgcatgataacacgcctt
cttgatatgatgctttacctttgtgaaagaggacatgttgaggctggtatggtattccag
ctcttagaagatctgacggacatgtcaactatcaaagattgcaaacatgtctttgggtat
atcgagagcaaacaggatgtcttggggaagcaagaattatttcggcgtggcaagttggtt
atgctgaggacatgcaaccaattactccaaagactttcaaagtcaaacgatgtggtcttc
cgtggacgaattatcatgtttctggcacatttcttcccgttgtcagagcgttcagctctc
aacatcaagggagttttcaacatatcaaatgaaactaagtatgagaaagatcccaccgcc
ggaatttctgttgacttcaacttctaccagaccttgtggagtcttcaggagcatttcagg
aacccagcttcgactactacaaacccaacaaaatggcaaaagtttgcttctaatttaatg
gtcgtgttaagcacatttgaatctcagactctctgtagtgctgatggaaagcataacaat
actgagcaggagggggatgctgcttccaatattaagtaccttactagcagtaaattgatg
gctttggagttgaaggacgcaagttttcgatgccacatccttgtccaatgccttatattt
tttgattgtctgaaggcgcctggaaagagtgacaaggaaggtccatccgagagcatgaaa
gaggaaatcaaatcctgtgaagagcgtgttaagaacctcctggagatgattccacagaaa
gggagggaattcctacgaagcattgagcatattgttgagcgggagagaaactgggtttgg
tggaagagagatggatgtccagcatttgaaaaacaaacttttgaaaagaagtcgggtcaa
gctggagtcaggaaacgtaacccaaggtggaggttgggaaacaaagaacttgcccaactg
tggaaatgggcagaactaaaccctactgctttgactgatcctgaccgagtccgcacacca
tcagttagagaatattggaagccacttgcagaagatatggacacatctgccggaattgag
gaggagtatcaccacaaaagtaatcgtgtttattgctggaaaggtttacggtttcaagcc
agacaagatttggaaggattttctcgattttgtgaagacgggatcgagggggttgtacct
tga
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