Triticum dicoccoides (wild emmer wheat): 119330932
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Entry
119330932 CDS
T07278
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119330932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdc03021
]
119330932
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119330932
Transcription machinery [BR:
tdc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119330932
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119330932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
119330932
NCBI-ProteinID:
XP_037459972
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All DBs
Position
7A:complement(389260202..389269372)
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AA seq
933 aa
AA seq
DB search
MASAAAAAPVVGQVVERFRARLREEAGEEPGAAAVVGVYKEALAELTFNCKPIITELTII
AGQHAALAARGIADVICARILEVPVEQKLPSLYLLDSIVKNIGREYVEDFATRLQKVFCF
AYREVHPKQHPAMRHLFRTWSQVFPSSVLQGIEDELQFSPSENKRPATTTIPRQPESLSP
RPSHGIHVNPKYLEAQHQLKNGTKVDQLATRGRQMLDVAEDHINGLTTNSLRGFPSTSSK
LQRSMIPYTENPDQQETFQSRIGLIRRDMSRSPPPDVLPRNASPKRPLEMPQLSHSVLGH
DPRRLPDRNGWFEWQHAFEDSAQRPSMSTLDEEYRKQSARELIDAYGNSQGNDADDRLPK
MQRLESNGMASRSSAQKWLTSEEEEYTWEDMRPTLSRNRNNILSLPSSETLRAGFPGPNT
GQLDSDIGMRSWRSQAPRPALNLEDRTGHVDIATSRRYPGNFGLQNGAISEYHSSENTLD
PGRILAMSAPPWQQTNGLPLRIQAPQPSSTLNRLALPTDVEMPVKMLATGGPYDAMHVDL
PLTNRSSPAPAPIEWPLHHHSQPPHNTKDIRGATDSLEVRPFIRHGVNSSVFVPRHLYDA
LDRKTVSTGNLAQPPYQHPDLLSSSQQNQGTNFGNQSQPHDVPQFHPHSHSHPPEAFRSF
APSMPIAPPQNPFQGQGGSAAVPPVTPLPNTFSVTPTVQPYGVSSVSSFALPPLHRGLPP
ASLQMGPSSSQVGGPTTYFSGILSNLMNHGVITLEPSSQPQDSVGVDFNVDLKVRNESVI
NALYQDLHRQCKTCGLRFKCQEEHRAHMDWHVTKNRNSKNRKQSSRKYFVTVGEWLRAAE
TVGNDGVPSFELTEPIPDRNEEKEMAVPADENQTTCALCQEPFEDFYSDETEEWMYKGAV
YMNAPDGNIVGLQRSHLGPIVHSKCRSGPSNIS
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgccgctgcggcggccccagtcgtgggccaggtcgtggagcggttccgcgcg
cggctgcgggaggaggcgggagaggagccgggggcggccgcggtggtgggcgtctacaag
gaggccctcgccgagctcaccttcaactgcaagcccatcatcaccgagcttaccatcatc
gcgggccagcacgccgcgctcgccgccaggggcatcgccgacgtcatctgcgcccgcatc
cttgaggtgccagtcgagcagaaattgccatctttgtatctgctagatagtatcgtgaag
aacataggacgagaatatgtagaggactttgccactcgattgcagaaggtattttgtttt
gcatacagggaagttcatcccaaacagcatcctgcaatgcgacacctcttccgtacctgg
tcgcaagtgttcccttcttctgtccttcaagggatcgaggatgagcttcagttttctcct
tcagagaataagcgtcctgccacaacgactattccgcgacagccagagtcgttatctcct
aggccatctcatggcatccatgtaaatccaaagtatctagaagcgcaacaccaactcaag
aatggtaccaaggtggatcagctagcaactcgaggcaggcaaatgcttgacgtggcggag
gatcatattaatgggttaacaacaaatagtttgcggggatttccttccacttcttcaaag
ctccagagatctatgataccatatactgaaaatcctgatcaacaagaaacatttcaatca
cgtattggattgataagaagagatatgtccagatcaccacctcctgatgtgctccctagg
aatgcatccccaaaaagaccactagagatgccgcagctgtctcattctgtattggggcat
gatcctagaagattgcctgatagaaatggttggtttgaatggcaacatgcttttgaggat
agtgcacaacggccttcgatgagcacgcttgatgaagaatataggaaacaaagtgcaaga
gaacttattgatgcctacggaaattctcaaggcaatgatgctgatgataggcttcccaag
atgcaacggctagaatcaaatggcatggcaagtagatccagtgcacaaaaatggctcact
tcagaggaagaggagtatacttgggaggatatgcgtccaactttgtcccgaaatagaaac
aacattctgtctttaccttcctctgaaactttgagagctggatttcctgggccaaacact
gggcagctggattctgatattgggatgcgcagctggcgaagccaggctcctcgaccagca
ctaaatctcgaagacaggactggtcatgttgacatagccactagtaggagatatccaggc
aattttggtctgcaaaatggagctatttcagagtaccatagttctgagaatacccttgat
cctggaagaattcttgctatgtcagctccaccgtggcagcagactaatggcctgcctttg
cgaatacaagcacctcaaccttcatcaacactgaataggttggcactgcccactgatgtt
gaaatgcctgtcaagatgttggccactggtggtccatatgatgctatgcatgtagactta
cccttgactaataggtcctcgcctgctcctgctcccatagaatggcctcttcatcatcat
agtcaaccaccacataatacaaaagatattagaggtgcaacagatagtcttgaagttagg
ccatttatcaggcatggagtcaattcatctgtatttgttcctcggcatctatatgatgca
ttggatcggaaaactgtaagtaccggtaacttagctcaaccaccataccagcacccagat
ttgttgtcatcgagtcaacaaaatcaaggtacaaattttggaaatcaatctcagcctcat
gatgtgccacagtttcatcctcattcccattcccatcctccggaggcatttagaagcttt
gcccccagcatgcctatagctcccccccaaaatccattccaaggacaaggaggtagtgca
gcagtaccaccagttacacctctaccaaacaccttttctgtaacacctactgtgcaaccc
tatggtgtgtcgtcagtgtctagttttgctctgcctccattacatcgtggcctacctcct
gcttcgttgcagatgggtccatcttcatcacaagttggtgggcctacaacatatttctct
ggaattttaagtaaccttatgaatcatggtgtaattacactggagccttctagtcaacct
caggactctgttggagttgacttcaatgtagacctcaaggtgcggaacgagtctgtcatt
aatgctctgtatcaggatctccacaggcaatgcaaaacgtgtggccttcgttttaaatgc
caggaagagcaccgtgctcatatggattggcatgttacgaaaaacagaaattccaaaaat
cgcaagcaatcttcacgtaaatattttgtcaccgtgggggaatggttaagagcagcagaa
acggtaggaaatgatggtgttccttctttcgagctcacggaaccaatccctgacagaaat
gaagagaaagaaatggctgttcctgccgatgaaaaccaaacaacatgtgctttatgtcaa
gagccatttgaggatttctacagcgatgaaactgaagagtggatgtacaaaggtgcagtt
tacatgaatgcacctgatggtaatattgttggtctccagaggtcgcatttggggcctatt
gtccattccaaatgtcgatctggccccagtaatatttcttag
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