Triticum dicoccoides (wild emmer wheat): 119355227
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Entry
119355227 CDS
T07278
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03013
Nucleocytoplasmic transport
tdc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119355227
03015 mRNA surveillance pathway
119355227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119355227
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119355227
mRNA cycle factors
P-body specific factors
119355227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
119355227
NCBI-ProteinID:
XP_037477906
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All DBs
Position
2A:complement(535516498..535524806)
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AA seq
512 aa
AA seq
DB search
MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNF
KSPEDVVEFAEFFNGHVFVNEKGAQFKALVEYAPSQQVPKSNIKKDARQGTITKDPEYLE
FLELISKPTEHLPSAEIQLERKEAERAAAGKVPPVVTPLMVYVRQQRAAKSMAQRSVSSR
LSRKVAGVVTSSSSPSKRSSERRRASTSTDRREQQYVVRDNAKEKPTYILAPKRDDHTHR
EKIIAGTSDATSGGPSGSAQVIDGKKDKIVLLKGRARVDSNISDSSTPQQSLPPSRNTPP
STSRQDQRNEASVRIIKTILSNKEGRHAIASSQHEQEGHIISAEKDKRPPRAPNSRSTVK
DQTVENAEKNHYDDKHLHGSGPIGEKIERHARNRDRPDRGVWAPRRYDKSASGGSTQASS
SEFPLMQSHSMDNFSQQVDGHGERKIDTRSPGGRGGLVENGNRHANRRGPPRGSKEMEIP
LITSDGKPSKRGPASYVAHERQVWVQKSSSGS
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccggcgcaccgcacgaaggtggtgctcaggcggctgccgccggcgattgcg
cagcaggccgtcgtggaccaggttgacgcgcgcttcgctggtcggtatgactgggcctgc
ttccgccccggtaatgccagccaaaagaatcatagatattcgcgtctctaccttaacttc
aagagcccagaagatgttgttgagtttgctgagttcttcaatgggcatgtatttgtgaat
gaaaagggtgcccaatttaaagctcttgtggaatatgcaccatcacaacaggttccgaag
tcaaatatcaagaaagatgctcgtcaaggaactataacaaaagatccagaatacttggag
tttcttgagcttatatcaaagcctactgagcatttgccaagtgctgaaattcagcttgaa
aggaaagaagccgaaagagcagctgctggaaaggtgccccctgttgtgacacctcttatg
gtttatgttcgtcagcaaagggcggctaagagtatggctcagaggtctgtaagtagtaga
ctaagcagaaaagttgcaggcgtggtaactagtagttctagtccatctaaaaggtcttct
gaaaggcgcagggcctccacttcaacggaccggagagagcagcagtatgttgtgcgagat
aatgctaaggagaagccgacttacatcttagcaccaaagagagatgatcatacacacaga
gagaaaatcattgctggaacttcagatgctacaagcggtgggccatctggatctgctcag
gttatcgacggtaaaaaggacaaaattgtccttctgaaaggaagagcgagggttgattcc
aatatatctgatagctcaaccccgcagcagtctctgccgccttcgagaaatacaccccca
tcaacttctagacaagaccagcgaaatgaggccagtgtcagaattatcaagactatactt
tcaaacaaggaaggacgccatgcaatagcatcatctcaacatgagcaagaaggtcacata
attagtgccgagaaggataagaggccaccacgggctccgaactcgcgttccactgtaaaa
gatcagactgttgaaaatgctgagaaaaaccactatgatgacaagcatctgcatggttct
ggacccattggtgagaagattgaaagacatgccagaaatagagataggcctgaccgaggt
gtttgggcccctcgtcgctatgacaagtctgcatcaggaggcagtacgcaagcatcatcg
tctgagttcccgctaatgcagtcgcactctatggacaatttctctcagcaagtagatggc
catggagagagaaaaatagacacaaggagtcctggtggccgtggtggccttgtggagaat
ggaaacaggcatgccaaccgccgtggtccgccacgtgggtcgaaggagatggaaatccct
cttattacatctgatggaaagccttcaaagaggggccctgctagctatgtggctcatgag
agacaagtatgggttcaaaagtcaagttcaggatcgtga
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