Triticum dicoccoides (wild emmer wheat): 119364354
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Entry
119364354 CDS
T07278
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03013
Nucleocytoplasmic transport
tdc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119364354
03015 mRNA surveillance pathway
119364354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119364354
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119364354
mRNA cycle factors
P-body specific factors
119364354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
119364354
NCBI-ProteinID:
XP_037485713
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All DBs
Position
2B:complement(480109406..480121033)
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AA seq
509 aa
AA seq
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MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWTCFRPGNASQKNHRYSRLYLNF
KSPEDVVEFAEFFNGHVFVNEKGAQFKALVEYAPSQQVPKSNIKKDARQGTITKDPEYLE
FLELISKPTEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRSVSSR
LSRKVAGVVTSSSSPSKRSSERRRASTSTQYVVRDNAKEKPTYILAPKRDDHTHREKIIA
GTSDATSGGPSGSAQVIDGKKDKIVLLKGRARVDSNISDSSTPQQSVPPSRNTPPSTSRQ
DQRNEASGRIIKTILSNKEGRHAIASSQHEQEGHIISAEKDKRPPRAPNSRSTVKDQTVE
NAEKNHYDDKHNHLHGSGPIGEKIERHARNRDRPDRGVWAPRRYDKSASGGGTQASSSEF
PLMQSHSMDNFSQQVDGHGERKIDTRSPGGRGGLVENGNRHANRRGPPRGSKEMEIPPIT
SDGKPSKRGPASYVAHERQVWVQKSSSGS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccggcgcaccgcacgaaggtggtgctcaggcggctgccgccggcgattgcg
cagcaggccgtcgtggaccaggttgacgcccgcttcgctgggcggtatgactggacctgc
ttccgccccggtaatgccagccaaaagaatcatagatattctcgtctctaccttaacttc
aagagcccagaagatgttgttgagtttgctgagttcttcaatgggcatgtatttgtgaat
gaaaagggtgctcaatttaaagctcttgtggaatatgcaccatcacaacaggttccgaag
tcaaatatcaagaaagatgctcgtcaaggaactataacaaaagatccagaatacttggag
tttcttgagcttatatcaaagcctactgagcatttgccaagtgctgaaattcagcttgaa
aggaaagaagctgaaagagcagctgctggaaaggagccccctgttgtgacacctcttatg
gtttatgttcgtcagcaaagggcggctaagagtatggctcagaggtctgtaagtagtaga
ctaagcagaaaagttgcaggtgtggtaactagtagttctagtccatctaaaaggtcttct
gaaaggcgcagggcctccacttcaacgcagtatgttgtgcgagacaatgctaaggagaag
ccgacttacatcttagcgccaaagagagatgatcatacacacagagagaaaatcattgct
ggaacttcagatgctacaagcggtgggccatctggatctgctcaggtcatcgacggtaaa
aaggacaaaattgtccttctgaaaggaagagcgagggttgattccaatatatctgatagc
tcaaccccgcagcagtctgtgccgccttcgagaaatacacccccatcaacttctagacaa
gaccagcgaaatgaggccagtggcagaattatcaagactatactttcaaacaaggaagga
cgccatgcaatagcatcatctcaacatgagcaagaaggtcacataattagtgccgagaag
gataagaggccaccacgggctccgaactcgcgttccactgtaaaagatcagactgttgaa
aatgctgagaaaaaccactatgatgacaagcataatcatctgcatggttctggacccatt
ggtgagaagattgaaagacatgccagaaatagagataggcctgaccgaggtgtttgggcc
cctcgccgctatgacaagtctgcatcaggaggcggtacgcaagcctcatcgtctgagttc
ccgctaatgcagtcacactctatggacaatttctctcagcaagtagatggccatggagag
agaaaaatagacacaaggagtcctggtggccgtggtggccttgtggagaatggaaacagg
catgccaaccgccgtggtccgccacgtgggtcgaaggagatggaaatccctcctattaca
tctgatggaaagccttcaaagaggggccctgctagctatgtggctcatgagagacaagta
tgggttcaaaagtcaagttcaggatcgtga
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