Triticum dicoccoides (wild emmer wheat): 119365452
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Entry
119365452 CDS
T07278
Name
(RefSeq) putative DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119365452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdc03400
]
119365452
Enzymes [BR:
tdc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119365452
DNA repair and recombination proteins [BR:
tdc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
119365452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
119365452
NCBI-ProteinID:
XP_037486985
LinkDB
All DBs
Position
2B:660404305..660414148
Genome browser
AA seq
1235 aa
AA seq
DB search
MAATVRFGLLVAMFQAMTRDRTSAKKRGRLRTFLDRAYGASGRDDYFSALRLILPSLDRE
RGSYGLKEAALAAALVEALGIAKDSPDAVRLTNWRRGGGGRNAGNFSLVAAEVLQRRQGM
TSGGLTIKEVNDALDRLSASDTRSEKASVLSSLIKKTNALEMKWLLMIIIKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKWVCEKLNDRSQRHKRQDIEVGKAVRPQLAMRVGNASSAW
KKLHGKPVVAECKFDGDRIQIHKHGEEIHFFSRTFLDHSEYTSGMSKFIKENILVDRCIL
DGEMLVWDTALNRFAEFGSNQEIAKAASEGLETNRQLCYIAFDILYSGDTSVIHQSLSER
HEILRKVVKPLKGRLEILVPTGGLNTHRPPDEPCWSIFAPNIEDVEKFFKETVENRDEGI
VLKDLDSKWEPGDRTGKWLKLKPDYIHAGADLDVIIIGGYYGSGRRGGEVAQFLVGLAVS
SDDNSHPKRFLSFCRVGTGLSDEELATLVTKLKPHFSKSGTPKKTPRFYEVTNNSKERPD
VWIESPDKSVILSITSDIRTIKSEVFAAPYCLRFPRIQRVRYDKPWHECLDVQSFVEIVH
SSNGSMHKAEDDKSLKNDNLKNPKINKRGEKKNVSIIPSHLMKTDISGLKGETLIFANTM
FYFVNTPPSYNLDYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAAIRHGRIIHYS
WILDCCKQKILLRLQPKYILFLADFARHKFPEEIDSYADFYYWDIDVSDLKQIFINMDKV
TVDPSMVHRYKKKYYADERFCFFQGCCVYLYHAPLVNEDYNVISDLALKRVKQDLTMHGG
QYCSSLAPATHLVIVSVLQVYNFDILYKSFSPAERRYLHDKRLHVVSNKWLEDSVEKQMK
LPETAYNLKPDTLEEIQIERSEEMAQPSNDKTAKNEDVEISHVKHARKRGRAASGSSKTV
RAAPRPVRTTRARRGNKQAKIDDGEPEENGPGETGQDDEKSNTHHISRMEEDNSDKDQRP
PRAAPRPVRRTSARRGTRQAKIDYRESDESGPGETGEDQKLGTDSVVKMEEDSLDEDQGP
PAGAQFITLDEREPKVVKLSAAEDTTTSPKFESKGTSERADAGEGTSMAAEKIEQMVDPL
HAMLLDMIPSLREDASSAPPAKVEHDPPRVRSSTSDNRAPVPETGGSASNPMAPAPRAGS
SSYSAGVPAPDPNPVAPKKKKVSYKDLADEFLKDW
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacggtgcggttcgggctcctggtggcgatgttccaggccatgacgcgggac
cgcacgtccgcgaagaagcggggccgcctccgcacgttcctcgaccgcgcctacggggcc
agcggcagggacgactacttcagcgcgctccgcctcatcctcccgtccctcgaccgcgag
cgcggctcctacggcctcaaggaggccgccctcgccgccgccctcgtcgaagcgctcggc
atcgccaaggactcccccgacgccgtccggctcaccaactggcgccgcggcggcggcggc
cgcaacgcgggcaacttctccctcgtagccgccgaggtgctgcagcggagacaaggaatg
acttctggcggattgacaataaaggaggttaatgacgcactcgatcgtctatctgcaagt
gatactaggtctgagaaggcttcggttctttcaagtctgatcaagaaaaccaatgccctt
gaaatgaagtggcttctaatgattattattaaagacttgaaattggggatcagtgagaag
agcatattccatgaatttcatcctgacgctgaggacttgttcaatgtcacttgtgactta
aaatgggtctgtgaaaagcttaatgatcgaagtcaaaggcataaacgtcaggatatagaa
gtcggaaaggctgtgaggcctcagctagctatgagagtcggtaacgcttcatctgcatgg
aagaagcttcacggcaaaccagtggttgctgagtgcaaatttgatggtgaccgtatccaa
attcataagcatggggaagagattcatttcttctcacggacctttcttgatcattctgaa
tatacatctgggatgtccaaatttattaaggaaaatatcctggttgacaggtgtattttg
gatggggagatgcttgtttgggacactgcgctgaatcggtttgctgaatttggctcaaac
caggaaatagcaaaggctgctagtgaggggctggagacaaatcgacagttgtgctatatt
gcttttgacattctttattctggagacactagtgttatccaccaaagtttgtcggagcgg
catgaaattctgcggaaggttgtcaaacctttaaagggtcgtcttgagattttggtccca
acaggtggtctaaacacccatcgtcccccagatgaaccatgctggtccatttttgctccc
aatattgaagacgttgagaaattcttcaaggagactgtcgaaaacagagatgagggaatt
gtactaaaggaccttgattccaaatgggaacctggtgatcgaactggaaagtggcttaaa
ctaaagcctgattatatacatgctggtgctgatctggatgttattattataggtggatat
tatggatcagggcgtcgaggaggagaggttgcacagtttttagttggtcttgcagtgtct
tcagatgataatagtcaccccaaaagatttctttcattttgtcgagtcggtaccggtctc
tccgatgaagaacttgccactctagtcacgaaactgaagccccactttagcaaaagtggg
acccccaaaaaaacacccagattttatgaagtaacaaacaattcgaaggagcggccagat
gtttggatagaaagccctgataagtcagtcatactatctataacaagtgatattcgaaca
atcaaatccgaggtttttgctgccccatactgcttgaggttcccccgcattcaacgagtg
agatatgataagccatggcacgagtgccttgatgtgcaatcatttgtggagatcgtgcac
tcaagtaatgggtcaatgcacaaggcagaagatgataagagtctgaaaaacgacaactta
aagaacccaaaaataaacaaaaggggggagaagaagaatgtatcaatcatcccttcacat
cttatgaagactgacatatcaggcttaaagggcgaaaccctgatatttgcaaacacgatg
ttctattttgtcaacacccctccgtcatataacctcgactatttccataaactggttgtg
gagaatggaggatctttctcgatgaatcttaatgactctgttactcactgcatagcagca
gagaagaaaggtatcaaatatcaggcggccatacgccacggaaggatcattcattattcc
tggatcttggactgttgcaagcaaaaaatacttcttcgtttgcaacccaagtatatcctc
tttcttgcagattttgctaggcacaaatttcctgaagagattgactcgtacgctgatttt
tactactgggacatcgatgtttctgacctgaagcagattttcatcaacatggacaaagtt
actgttgatccaagcatggtacatcggtacaaaaagaagtattatgcagatgaaagattc
tgcttcttccagggttgctgcgtttacttgtatcatgcacctttagtgaatgaggactac
aatgtaatatctgatcttgcactaaagagggtgaagcaggaccttacaatgcatggtggt
cagtattgcagtagccttgctcctgccacacatttggttatagtttcagttcttcaggtg
tacaattttgacatattgtacaagagcttctctccagctgagaggcgttacctacacgac
aaaagattgcatgttgtcagtaacaagtggttagaagattcagtggagaaacaaatgaaa
ctgcctgaaaccgcctacaaccttaaaccagatacattagaagaaatacaaatcgaaagg
agtgaggaaatggcccagccctctaatgacaagactgctaaaaatgaggatgttgaaata
tctcatgttaaacatgcaaggaaaaggggcagggcggccagcggtagttcgaaaactgta
cgggctgctcctaggccagtccgaacaacaagggctagaagaggaaataagcaggcaaaa
atagatgatggtgaacctgaagaaaacggtcctggtgaaacaggtcaagatgatgaaaag
tcgaacacacatcacatctccaggatggaagaagataacagtgacaaggaccaacgacca
cctcgagctgctcctagaccagttcgaagaacaagtgctagaagaggaacccggcaagca
aaaatagactatcgtgaatctgacgaaagcggccctggtgaaacaggtgaagatcaaaag
ctgggcacagattctgtcgtaaagatggaagaagatagcctggatgaagaccaaggaccg
ccagcaggtgcccagttcatcacactggatgagcgagagccaaaagtcgtcaaattgagt
gcagcagaggatacgacaaccagtccaaagttcgaaagcaaaggaacttctgaaagagca
gacgctggtgaaggaacaagcatggcagccgagaagatagaacagatggtggatcctctg
catgcgatgcttctcgacatgataccgtcgcttagggaagacgcaagcagcgctccccca
gccaaagttgagcacgatccgccgcgtgtgagaagttccacgtcggataacagggctccg
gtgcctgagacaggaggctctgcatccaatcccatggctccagcaccgcgtgcaggaagt
tcgtcatacagtgcgggggttccagccccagatccaaaccccgtggctccgaagaagaaa
aaggtgagctacaaagatctggccgacgagtttctgaaagattggtga
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