Candidatus Thiocaldithrix dubininis: QJT80_06225
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Entry
QJT80_06225 CDS
T09759
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
tdu
Candidatus Thiocaldithrix dubininis
Pathway
tdu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QJT80_06225 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdu03400
]
QJT80_06225 (uvrB)
DNA repair and recombination proteins [BR:
tdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QJT80_06225 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
QJT80_06225 (uvrB)
BRITE hierarchy
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
Kinesin
AAA_33
DUF87
UB2H
Microtub_bd
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WGZ92074
UniProt:
A0AA95HBP7
LinkDB
All DBs
Position
complement(1298833..1300857)
Genome browser
AA seq
674 aa
AA seq
DB search
MTQANRFQLQTQYQPAGDQPSAIQSLVDGLNNGLLHQTLLGVTGSGKTFTMANIIQQTQR
PAIILAHNKTLAAQLYGEMKDFFPNNAVEYFVSYYDYYQPEAYVPSKDVYIEKDASINDH
IEQMRLSATRNLMERNDVILVATVSSIYGLGDPNSYMKMILHLVRGDKIDQRDMLRRLAE
LQYTRNDLDLQRGTFRVRGEIIDIHPADSDKEAIRVELFDNEIENLSFFDPLSGEVLRRV
PRLTIYPKTHYVTPREVLVEAVEHIKVELKARLAQLREQNKLVEAQRLEQRTLYDIEMIM
ETGYCSGIENYSSYLSKRPAGAPPPCLFDYLPKNAIVFVDESHVTIPQFGGMYRGDRSRK
ETLVEYGFRLPSALDNRPLMFEEFENLIPQAVHVSATPGKYEGEHADNVAEQVVRPTGLV
DPEVEVRPVLSQVDDVMSEVNERVKCNERVLITTLTKRMAEDLTDYLMEHDIKVRYLHSD
IDTVERVEIIRDLRKGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTI
GRAARNANGKAILYGDKITDSMRKAIDETERRRAKQMAHNTEHGIIPTTIQKRIADVMEG
AYANVARGKGKTRGEKQVAEQAAQYNTLTPEQALKQLKKLEDKMFQHARNLEFEQAAAVR
DQIGQIRARVFGLD
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagcgaatcgctttcaattacaaacccaataccaaccggctggcgatcaaccc
tcggctattcaatcgctggtggatggcttaaataatggccttttgcatcagaccttgtta
ggcgtaacgggttcaggcaaaaccttcacaatggcgaatattattcagcaaacccaacgc
ccggcgattattttggcacataataaaacgctagcggcgcagctttacggcgaaatgaaa
gactttttcccgaataatgccgtggaatatttcgtttcctattatgactattatcagcca
gaagcttacgttccgtccaaagacgtgtatatcgaaaaagatgcgtcgattaatgaccac
atcgagcaaatgcgtttatctgccacccgcaacctgatggaacgcaatgacgtaatttta
gtggcaacggtttcatcgatttacggtttgggcgatcccaattcgtatatgaagatgatt
ttgcatttggtgcgtggtgataaaattgatcagcgtgatatgttgcggcggctagcagaa
ttgcaatacacccgcaacgatctggatttacaacgcggtacattccgcgtgcgcggtgaa
attattgatattcaccctgccgattcagataaagaagccattcgggtagaactgtttgat
aatgaaatcgaaaatttaagctttttcgatcccttaagtggcgaagtattacgccgagtc
ccccgtttaactatttatcccaaaactcactatgtcacgccgcgtgaagtcttagtcgaa
gccgtcgagcatattaaagttgaattaaaagcacgtttagcgcagttacgcgaacaaaat
aaattagttgaggcgcaacgccttgaacagcgtaccttgtatgacattgaaatgattatg
gaaactggctattgctcaggcattgaaaactactcaagctatttatccaaacgccccgcc
ggtgcgccaccgccctgtttattcgattacttgcctaaaaatgcgattgtcttcgtggat
gaatcacatgtcaccattccacaatttggcggtatgtatcgcggcgaccgttcacgtaaa
gagaccttagtcgaatatggctttcgcttgccttccgcgttggacaatcgcccgctcatg
tttgaagaatttgaaaacctaattccacaagcggtgcatgtgtctgccacccccggtaaa
tatgaaggtgaacatgcagataatgtggcagaacaggtggtacgccccacaggtttagtc
gaccccgaagtagaagtacgcccggtattatcgcaagttgatgatgtcatgtcggaagtc
aacgagcgagtcaaatgcaatgaacgcgtgttgattaccaccctgaccaaacggatggcg
gaagacctcaccgattacctgatggaacacgatattaaagtgcgctatttgcactcggat
attgatacggtagagcgcgtcgaaatcattcgggatttgcgtaaaggcgaattcgatgtg
ttagtgggtattaacttgctgcgtgaaggcttggatattcccgaagtctcattagtcgct
attttagacgcggataaagaaggcttcttacgctccgaacgctcgctaattcaaaccatt
gggcgcgcagcacgtaatgcgaacggtaaagccattttatacggcgacaaaatcaccgat
tccatgcgtaaagccattgatgaaaccgaacgccgccgtgctaagcaaatggcacataac
accgagcatggcattatccccacaaccattcaaaaacgcattgcggatgtaatggaaggc
gcgtatgccaatgtggcacgcggtaaaggtaaaacgcggggtgaaaaacaggttgccgaa
caagcagcacaatacaataccttaacccctgagcaggcgctgaaacagcttaaaaaactg
gaagataaaatgttccaacacgcccgtaatttagaatttgaacaagcggcggcggtacgc
gaccaaattgggcaaatccgcgcaagggtgtttggattggactag
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