Triplophysa dalaica: 130412213
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Entry
130412213 CDS
T09616
Symbol
mtrex
Name
(RefSeq) LOW QUALITY PROTEIN: exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130412213 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130412213 (mtrex)
03041 Spliceosome [BR:
tdw03041
]
130412213 (mtrex)
03009 Ribosome biogenesis [BR:
tdw03009
]
130412213 (mtrex)
03016 Transfer RNA biogenesis [BR:
tdw03016
]
130412213 (mtrex)
Enzymes [BR:
tdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130412213 (mtrex)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
130412213 (mtrex)
Spliceosome [BR:
tdw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130412213 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
130412213 (mtrex)
Ribosome biogenesis [BR:
tdw03009
]
Eukaryotic type
Pre-60S particles
Helicases
130412213 (mtrex)
Transfer RNA biogenesis [BR:
tdw03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
130412213 (mtrex)
BRITE hierarchy
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
130412213
NCBI-ProteinID:
XP_056593376
EnsemblRapid:
ENSTDLG00000020279
LinkDB
All DBs
Position
22:6312634..6339754
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDDLFSVFDEDQSGSGKKVIPKLETQSGKTTDKGGNKQTDSPTVRKRDADLDGPD
EMVLGKKQKLETVSSEEINLAELMPKVKTEQVETVEGCTHEVALPANEEYKQLKPRVGKA
SKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYR
PTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDVGETGGNSGAKWDPKGRKGG
TRGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDEEKKLVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMKK
LEEAYNAIQIPNEESVVTYYKIRQQLAKLGKEIEDFIHKPRYCLPFLQPGRLVRVKKNDL
DFGWGVVVNFSKKANVKAAAGDSEPLYVLEVLVHCSKDSLKNSATEIAKPAAPAEKGEMQ
VVPVMLHLITSISSVRLYIPKDLRSYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKVEAFEHRMYTHPLHSDPNLDAVYTLCEKKALIAGDIKAAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMIFNGLFNDLTAEQATA
LLSCFVFQENANEMPKLTEQLAAPLRQMQECAKRIAKVSAEAKLDVDEDTYLKQFRPHLM
DVVYTWANGSSFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAMGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggtgatgatttgttcagtgtttttgatgaagaccagtctggctct
ggtaaaaaagtcatcccaaagttagaaactcagtcggggaaaacgactgataaaggaggt
aataaacagacggattcaccaactgtccgcaagagagatgctgatcttgatggtccagat
gagatggtgctggggaaaaagcaaaaactggaaactgtgtcgtctgaggagatcaatttg
gcagagctcatgcctaaagtaaaaacggagcaggtggagacagtggagggatgcacacat
gaggtggctttacctgccaatgaagaatataaacagctaaagccacgggttggaaaagct
tctaaggagtatccattcgtactagatccgttccaacgtgaggccatactctgtatcgac
aacaaccagtctgtgcttgtgtcagcccacacgtcagcggggaagacagtgtgtgcagag
tatgccatcgctctggcgctcagagaaaaacagcgagtgatctttaccagccccattaag
gccttgagcaaccagaagtacagagagatgtatgaggagtttcaggacgtgggtctgatg
accggtgatgtcacgattaaccccacagcttcttgtctggtcatgactactgagattttg
aggagcatgctctacagaggatcggaagttatgagggaggtggcgtgggtcatcttcgat
gagatccattacatgagagactcggagcgtggggtggtctgggaggaaaccatcatcttg
ctgccggacaatgtgcactacgtctttctatcggccactattcccaacgctcgacagttt
gcagagtggatctgtcacttacacaaacagccctgtcacgtggtgtacacggactaccga
cccactcccctgcagcactacatctttccagcagggggtgacggactacatcttgtcgtg
gatgagaacggagactttagagaagacaacttcaacacagccatgcaggtcctgagggat
gtgggggaaacaggaggcaacagtggggccaaatgggacccgaaaggcagaaagggtgga
accagaggtccatccaacgtctttaagattgtgaagatgatcatggagagaaactttcag
ccggtgatcatcttcagcttcagtaagaaggagtgcgaggcttacgccctacaggtggcc
aaactggattttaacacagatgaggagaaaaagctggtggaggaagtgtttaacaacgcc
atagactgcctttctgatgaagacaagaagctgcctcaggttgagcatgttctaccgttg
ctcaagagggggattggaattcatcatggaggtctgcttcccatcctgaaggagaccatt
gagattctcttctccgagggcctgctgaaggctttgtttgctacggaaacttttgccatg
gggatcaacatgcccgctcgaaccgtcctctttaccagtgcacgcaaattcgacggcaaa
gacttccgctggatcacttctggagaatacatccagatgtcaggccgtgctggcagaaga
ggaatggacgagaggggaatcgtcatatttatggtggatgagaagatgagccctgcggtg
ggcaaacagttacttaagggttcggctgatcctctgaacagtgcttttcatctcacctac
aacatggtgctgaatctgctgcgtgtggaagagatcaacccagagtacatgctggagaaa
tccttctaccagttccaacattacagagccgtgcctggtgttgtcgagaagatgaagaag
ttggaggaggcttacaatgccatacaaatccccaatgaagagagcgtggtgacctactac
aaaatccgccagcagctggccaaactgggcaaagagatcgaggactttattcacaagccc
agatactgtctgcccttcctgcagcccggcagactagtcagggtcaaaaaaaatgatttg
gattttggttggggagtagtcgtcaatttttccaagaaggcaaatgttaaggctgccgcg
ggtgattctgagccgttgtatgtgctggaggtattggtccactgcagtaaggacagcctg
aagaactcagccacagagattgcaaaaccagcagccccagcagagaagggcgagatgcag
gttgttccagtaatgctgcatctcatcacctccatcagctctgtccgtctctacatcccc
aaagacctgcgatcttatgacaacagacagagcatgctcaaatccatacaggaggtgcag
aaacgtttcccagatggcgttccgctgctagacccaatagacgacatgggcatcaaggac
cagggcctgaagaaagtcatccaaaaggtggaggcattcgaacacagaatgtacacacac
ccgctgcacagcgaccccaacctggatgctgtttacaccctgtgtgaaaagaaagcgctg
attgcaggcgacatcaaggcagcgaagcgcgaactgaagaaagctcgaaccgtgctgcag
atggacgagctcaagtgcaggaagcgcgtactgcggcgcctgggattcgctacttcctct
gatgttatcgagatgaagggtcgtgtggcgtgtgagatcagcagtgcggatgagctgctg
ctgactgaaatgatatttaacggtctcttcaatgaccttacagcggagcaggcaaccgcg
cttctcagctgcttcgtcttccaggaaaacgccaacgagatgcccaaactgacggagcag
ctggcagcacctctgcggcagatgcaggaatgtgcaaagcgtattgctaaagtgtcggcc
gaagcaaagctagatgtggacgaggacacttatctgaagcagttccgtccacatcttatg
gatgtggtctatacctgggccaacggctcctccttcgcacagatttgcaagatgacggat
gtgttcgaaggtagtattatccgctgtatgcgaaggttggaagagctcttgaggcagatg
tgccaggcagcaaaggccattggaaacacagagctggagaacaaatttgcaatgggtata
acgaagataaagagggacattgtatttgcagccagcctctacctgtga
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