Triplophysa dalaica: 130417458
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Entry
130417458 CDS
T09616
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
tdw
Triplophysa dalaica
Pathway
tdw03013
Nucleocytoplasmic transport
tdw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130417458 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
130417458 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130417458 (thoc1)
03041 Spliceosome [BR:
tdw03041
]
130417458 (thoc1)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
130417458 (thoc1)
Spliceosome [BR:
tdw03041
]
Complex C
Other components
EJC/TREX
130417458 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130417458 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
130417458
NCBI-ProteinID:
XP_056599007
EnsemblRapid:
ENSTDLG00000026943
LinkDB
All DBs
Position
3:complement(16343068..16348116)
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AA seq
656 aa
AA seq
DB search
MSPPIQFNFTEARDKFTAATKSAVDLRNCKPLTSAFSHLHGNETEKKSTLDQALRGVLED
QIVQQKVSVEDFLSLIFISIECVTEGICSATSPFLLLGDVLDCLPLDQCDKIFCFVEEKV
STWKSNTFYSAGKNYLLRMCNDLLRRLSKTQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQESTLGMPHSEVKEDGMEVEEGEMGDEDAPPSCSIPIDYNLYRKFWT
LQDYFRNPLQCYDKFSWMTFLKYSDETLAVFKSYKLDDMQASKRKLEEMRTAAGEHVYFA
KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSSCVLNDDQSLWIEDTTK
LVYQLLRETPPDGDKFASMVEHILNSEENWNSWKNEGCPSFVKERPTETKPIRPSRKRAA
PEDFLGKGPDRKILMGNEELTRLWNLNPDNMEACKSDNREFMPSLEDFFEEAIEQADPTN
MVEEEYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFKSLAEYLENMVIKLAKELPKDLP
SEEIKTGEEDDDENGDNLLKESNDSPSIQSKGVTNSQMDEIAAKLGAQWKMLADHLEMSE
KEIRVIEADSEDVELQAKMLLVAWQDREGSQATMESLVTALNAAGFSNITDALNET
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccgatccaatttaactttaccgaggccagagataaatttacggctgccacc
aaaagtgctgtggatctcaggaactgtaaacccctgacaagcgctttcagtcatctgcat
ggaaatgaaacagagaagaaaagcactcttgatcaggctctacgtggagtccttgaagac
cagatagtgcagcagaaagtgagtgttgaggatttcctttctctgatcttcatcagtatt
gagtgtgtgactgaaggcatctgctctgctacctctccgtttctattgcttggtgacgtt
ctggactgtcttccactggaccaatgtgacaaaatattctgctttgtcgaagaaaaagtc
tctacatggaagtctaatactttctactctgcgggtaaaaactacttgttaagaatgtgt
aatgatctcctcagaagactctctaagacacagaatacagtattttgcggacggatccag
ctgtttttagcacgtctcttccctttgtctgaaaaatcaggattaaatttacagagtcaa
ttcaacctggacaacattactgtgttcaacaaaaatgaacaggagagcacacttggaatg
ccgcattcagaagtgaaggaggatgggatggaagtagaggaaggggagatgggtgatgaa
gatgcacctccatcctgttccattcctattgactacaacctgtacagaaagttctggaca
ctccaggactattttaggaacccccttcaatgctacgacaaattctcatggatgactttt
cttaagtactccgatgagacactagccgtgtttaagagctataaactggatgacatgcag
gcatctaagagaaagctggaggagatgaggactgctgcaggcgagcatgtctacttcgcc
aagtttctaaccagcgagaagttgatggatcttcagctgagtgacagcaatttcagacga
cacattctgcttcaataccttattctcttccagtacctcaagggtcaggtcaagttcaag
agcagttccagttgtgttttgaatgatgaccagtctttgtggattgaggacacaaccaaa
cttgtctatcagctactaagagaaacccctccagatggtgacaagtttgcatctatggtt
gagcacattctgaactcagaagaaaactggaactcttggaagaatgagggctgcccaagt
tttgtaaaagaaagaccgacagagaccaaacccatccggccaagcagaaagagagcagcg
ccagaggactttctggggaaaggccctgatcgtaagatactcatgggaaatgaggagctc
acgaggctctggaatctaaatccagataacatggaggcctgcaaatcagacaacagggag
ttcatgccgtcattggaggatttctttgaagaagccatcgaacaggccgatccaacaaac
atggtggaggaagagtacaaagtggtgcgcaactcaaactatggctggcgagccttacgg
ctgctgtccaggagaagtcctcacttcttccagcccaccaaccagcaattcaaaagtcta
gcggagtatctggaaaacatggtcatcaaactggccaaagagcttcctaaggacctccca
tctgaggagataaaaacaggagaggaagatgatgatgagaatggagataacctgttaaaa
gagagcaatgacagtcccagcattcagagcaaaggcgtgaccaatagtcagatggatgag
atcgccgccaagctcggagcccagtggaagatgctggcggaccatctggaaatgagcgag
aaggagatccgggtgatagaggctgatagtgaggatgtggagctgcaggcaaagatgctg
ctggtggcctggcaggaccgagaaggctcacaagctacaatggagagcctggtgacagcc
ctcaatgcggcaggcttcagcaatatcacagacgcccttaatgaaacgtaa
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