Triplophysa dalaica: 130417569
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Entry
130417569 CDS
T09616
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03013
Nucleocytoplasmic transport
tdw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130417569 (upf1)
03015 mRNA surveillance pathway
130417569 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130417569 (upf1)
Enzymes [BR:
tdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130417569 (upf1)
5.6.2.5 RNA 5'-3' helicase
130417569 (upf1)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130417569 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
130417569 (upf1)
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
130417569
NCBI-ProteinID:
XP_056599175
EnsemblRapid:
ENSTDLG00000009611
LinkDB
All DBs
Position
3:complement(25147064..25166322)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDAVLPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGGNPMGSMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKSKTGGRGGRQRNRGTGNHGSGQANMPSS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcacagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagtttgagttcaccgactttacgctg
cccagtcagacccagacgcagggccagacccagagccagctcgacaaccaggtgaacgga
cctgatgcagttctgcccaatggagaggatgcagtggtgaagaccagccaacttctggct
gagctgaactttgaggaggacgaggaagacacttactacactaaagacctgccgctgcac
gcctgcagttattgtggcatccacgacccagcatgtgtggtctattgcaacaccagcaaa
aagtggttttgcaacggccgcggtaacacttccgggagtcatattgtgaatcatttagtg
agggccaaatgtaaggaggtgaccctgcataaggatggcccgctgggcgagaccgttcta
gagtgctataactgcggctgtcgtaacgtcttcctgctcggcttcatcccggctaaagca
gattctgttgtggtgctactatgcaggcagccatgtgccagtcagagcagtctgaaggac
attaattgggacagttctcaatggcagcccctcattcaggaccgctgctttctgtcatgg
ctggtgaagatcccatccgagcaggagcagctaagggcccggcagatcacggcccagcag
atcaacaaactcgaggagctgtggaaggaaaacccgacggctacgctggaagatctggag
aaacccggagtggatgaggaacctcagcacgttctgctgagatatgaagatgcctatcag
taccagaacattttcggaccccttgtcaaactcgaggctgattatgacaagaaacttaaa
gagtcccaaactcaagacaatataactgtcaggtgggatttgggactgaataaaaagcgg
atagcttatttcaccttgcccaagacggattcaggtgacatgcgactgatgcagggcgat
gagatctgtctgcgctataaaggagacatggctccactctggaaagggatcggacacgtc
atcaaagtccctgacaattatggtgatgaaatcgccatcgagctgcggagcagtgctgga
gctcctgtggaggtgccccacaacttccaggtggactttgtctggaagtctacatctttt
gaccgaatgcagagtgccctcaagacgtttgctgtggatgagacgtctgtgtctggctac
atctaccacaagctgctgggtcatgaggtggaggacgtcatcatcaaatgccaactgcca
aagcgcttcactgcacaaggactgccagatctcaaccactcacaggtttacgctgtgaag
actgttctgcagagacccctcagcctgatccaaggaccaccaggaaccggcaagactgtg
acctccgccaccatcgtctatcatctggccagacagggcaatggaccagtgctggtgtgt
gctcccagtaacattgcggtggaccaactaactgagaagatccatcagacagggctgaag
gtggtgcgtctgtgtgctaagagtcgtgaggccatagactcgcctgtgtccttcctggct
ctgcacaaccagatccgcaacatggacagcatgccagagttgcagaaattacagcagctg
aaggatgagaccggcgagctgtcgtcatctgacgaaaaacgataccgagctctcaaacga
accgcagagagagaactgctcatgaacgcagatgtgatctgttgcacatgtgtgggggcc
ggcgatcctcgactggcgaagatgcagttccgctccattctcattgatgagagcacccag
gccacagagcccgagtgcatggtgccagtggtgctcggggccaaacagctgattctggtg
ggcgatcactgtcagctgggtcctgtggtcatgtgtaagaaagcagctaaagcgggactg
tctcagtctctgtttgagaggcttgtggttctgggtatcagacccatccgtctacaggtg
cagtatcgtatgcatccagcgctcagtgctttcccctccaacatcttctacgagggatca
ctgcagaacggagtcactgccgctgatcgcatcaagaaaggctttgacttccagtggcct
cagccggataaacccatgttcttctatgtgactcagggccaggaggagatcgctagctct
ggaacctcctacctcaacagaaccgaagcggctaacgtggagaagatcaccacccgtctg
ctgaaggccggagccaaacctgaccagatcggcatcatcaccccgtacgagggccagcga
tcgtacctggtccagtacatgcagttcagcggctcactacacaccaaactttaccaggag
gtggagattgccagcgttgatgcgttccagggcagagagaaggacttcatcatcctgtct
tgcgtcagagctaatgaacatcagggaattggtttcctgaacgacccacgccgtctcaat
gtggcactcaccagagccaggtatggcgtgatcatcgtgggcaatcccaaagctctctcc
aaacagcctctctggaaccatctgctgaactattataaagagcagaaggtcctggtggag
ggaccgctcaacaatcttagagagagtctcatgcagttcagtaaaccacgcaagctggtg
aacaccatcaaccctggtgcccgtttcatgagcactgccatgtatgacgcgagagaggcc
atgattcctggatctgtgtatgaccgcagtagcaccggacgtccttctaacatgtacttc
cagacccacgaccaggttggaatgatcggaaccggggggaacccgatgggctccatgaac
atccccatcccattcaacctggtcatgccacccatgcctccacccgggtacctgggccag
gtgaatggaccggctgcaggtcgtggtgcacccaaaagtaagaccgggggccgtggaggt
cgtcagaggaaccgcggcacaggtaaccacggcagcgggcaggccaacatgccaagcagc
caggcaagtcaggacctggtgtcgcagcctttctctcagggtcctctgacccagggctac
atcaccatgagccagccatcacagatgagtcagcctggactgtctcagcccgagctctca
caggacagctatcttggcgatgagtttaagtcccagatggatgtggcactttctcaggat
tcaacctatcagggtgaacgggcttatcaacatggaggagtgactggactctcacagtac
tag
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integrated database retrieval system
