Taylorella equigenitalis ATCC 35865: KUI_0461
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Entry
KUI_0461 CDS
T02186
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tea
Taylorella equigenitalis ATCC 35865
Pathway
tea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KUI_0461 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tea03400
]
KUI_0461 (mfd)
Enzymes [BR:
tea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KUI_0461 (mfd)
DNA repair and recombination proteins [BR:
tea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KUI_0461 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFN35547
LinkDB
All DBs
Position
complement(492903..496379)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSASFASNIFDSIQIPKNLKTGNRFDIPKLHGSSDALWISELAREQKKCIAIFCADPLEA
HRLLNEIKLFNGELNVQLFPDWETLPYDTFSPHQDLISERLKTLNLLHHSKVDVVLIPAT
TAVYKLSPPSFLGAYSFLFKRGDRINEQALISQLTDANYQHVNQVTASGEYSVRGGIIDI
YPMGSQIPYRLDLFDDEIETIRTFDVDTQRSALSVDKVQLLPGREYPFDEQARNTFRNKF
REKFEGDPTKAIPYRDVGNGINFAGIEYYIPLFFDETATIFDYLPTDAITLTIGDINKQI
SEFHADTQKRYKFLYSDRERPVLAPHELFLTAEEFFKKLNKFQRLHLSDIASPEIAIKEP
PKISVRKRSPEPFADLINLLSVNNTKVLLCVDSAGRREILSQRLYESGLSVDVVLQNLDI
ASFISGTANFAMVVAPINKGFTLSDIDVHILSENDLFPDTAALPHIKRKREKHTDVDAMV
RDLSEIQVGDPIVHAQHGIGRYQGLVHLEVNGETVEMLQINYEGDTKLYVPVSHLHVISR
YSGSDPESAPLHRLGSGQWEKACKKAAKQVRDTAAELLNLYALRAMREGYKFKIPLEDYH
QFSEGFDFEETPDQQQAIDSVLEDMASDKPMDRLVCGDVGFGKTEVALRAAFIAVANNKQ
VVILCPTTLLAEQHAQTFIDRFADWPINVALLSRFRTGKELNETINGCSDGNVDIVIGTH
KVLSNKVKFKSLGLIIIDEEHRFGVRQKEALKALRAEVDILTLTATPIPRTLSMSLEGIR
DLSIIATAPQKRLAIKTFVRREDKSTIREAVLRELKRGGQLYFLHNEVDTIHNRKAMLEE
LLPEARIGVAHGQMSERELEAVMKDFYHQRINLLLCTTIIETGIDVPTANTIIINRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTPGDEAITRQAKMRLEAIQAMEELGAGFYLAMHDLE
IRGTGEVLGEQQSGNIHEVGFTLYADMLNKTMDALKNGKEPDLESPFDLGTEINLHTSAR
LPEEYCPDVHSRLTIYKRLALQKTEGDVIDMQAELVDRFGPIPLAAKLLIHSHRLRILAE
KLAIKKVDVSEDIATLHFDISQEIIDPAIIIELIQKNRKIKLQGPTKLRIEFEDNFEIER
RIQIVRDLILHLTPQEVV
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagcctccttcgcttctaacatttttgattccattcagattccgaaaaatctaaaa
actggtaatcgatttgatattccaaaactacatggatctagcgatgccttgtggattagc
gaattagcccgtgaacagaaaaagtgcattgccatattttgtgcggatccactagaggcc
caccgtcttctaaacgaaattaaactttttaatggcgaattaaacgttcagctgtttcca
gattgggaaacattgccatatgatactttttctccgcatcaggatttaatttcagagcgt
ttaaaaactttaaatttacttcatcatagtaaagttgatgtggttcttattccagctacc
actgctgtatataaattatcaccacctagttttttaggggcttattcatttttatttaag
cgtggagatagaattaatgaacaagcacttatctcacaactcacagacgcaaactatcag
cacgtaaatcaagttacggcttcgggagaatattcagtacgtggcggaataatcgatata
tatcctatgggatcacaaattccatatcgattggatttgtttgatgatgaaattgaaacc
atacgcacattcgatgttgacacccaaagaagtgcattatccgttgataaagtgcagcta
ctacctggtagagaatatccttttgatgagcaagctagaaatactttccgcaacaagttt
agggaaaagtttgagggcgatcccacaaaagccataccataccgcgatgtgggcaatggt
ataaatttcgctgggattgagtattacattccactttttttcgatgaaacggccactatt
tttgactatttgcctactgatgcaatcactctcactataggtgacataaataagcaaatt
agtgagtttcatgcagacactcaaaagcgttataaatttttatattccgaccgcgaacgc
cctgttttagcccctcatgagttatttttaacagctgaggagttttttaagaagctaaat
aaattccaacgactccatctttcggatattgcctcccctgaaattgctataaaagagcct
ccgaaaatatctgtacgaaaaagaagtccagagccctttgctgatcttataaatctttta
tctgttaacaatactaaagtactcctctgtgtcgattctgctggacgcagagaaattctg
tctcaaagattatatgagtcaggtctatcagttgacgtagttcttcagaaccttgatata
gcttcattcatcagtggcacagcaaattttgctatggttgtagcccctataaacaagggg
tttactctaagcgatattgatgtacatattctttcagaaaacgatttatttcctgataca
gccgccctaccacacattaaaagaaaaagagaaaagcacacagatgttgatgcaatggtt
cgcgacctgtcggaaattcaagttggcgatccgattgtgcatgctcaacatgggattggt
agatatcaaggacttgtgcatctagaagtaaatggggaaaccgttgagatgctacaaatt
aactacgagggtgacacgaaattatatgttcctgtttcgcatcttcacgtaatctcccgt
tattctggaagcgatcccgaaagtgctccacttcatagacttggttctggtcaatgggaa
aaagcctgcaaaaaagctgccaaacaagttagagatactgctgcagaacttcttaatcta
tacgcattaagagctatgcgcgagggatacaaattcaaaattccacttgaagactatcac
cagttttcagaaggcttcgattttgaggaaactcctgatcaacaacaagcaatagactca
gttttagaagatatggctagcgataaacccatggataggcttgtgtgcggtgatgtaggc
ttcggtaaaactgaagttgccttaagagccgcttttattgcagtcgctaacaataaacag
gttgttattctgtgtcccacaacattgctagcagaacaacatgctcaaacatttatagat
cggtttgctgattggcctataaacgtagcattactttctcgattccgaactggaaaagaa
ttaaatgaaacaataaatggctgttcggatggcaacgttgatattgttatagggacacat
aaagttttatcaaataaagttaaatttaaaagcttaggtttgattattattgatgaagaa
catcggtttggtgtaagacaaaaagaggctttaaaggctttgagggctgaggttgacata
ttgaccctaacggcaactccgataccgcgcacattaagtatgtcacttgagggaatacgc
gatttgtccattattgccacagcaccacaaaaacgattagccattaagacatttgttagg
cgagaagataaaagtacgatacgcgaagctgttttgcgtgaattaaagcgcggtgggcaa
ctttattttctacataatgaagttgataccattcataacagaaaggctatgcttgaggag
ttattgccagaagctaggattggtgtggctcatgggcaaatgagtgagcgtgaacttgaa
gctgttatgaaggacttttatcatcaacggattaatttgttgttatgtaccacgattatt
gaaacaggcattgacgttccaaccgctaacacaataataataaatcgtgcagataagtta
ggtttggcacagttacaccaattacgcggtcgtgtgggtaggtcacatcatcaagcatat
gcttatttattaacaccaggagatgaggctatcacacgtcaagccaagatgcgtcttgag
gcgatacaggctatggaggaattaggagcaggattttatcttgcaatgcatgaccttgaa
atccgcggaacaggagaagttttaggcgaacaacaatctggcaatatccatgaagtgggc
tttacactttatgctgatatgcttaacaaaaccatggatgctttgaaaaacggtaaggaa
cccgatcttgagtcaccatttgatttgggtactgaaattaatttacatacctcagctcga
ttaccagaagaatattgtcccgatgtacactctcgccttacgatatacaaacgacttgca
ttgcaaaaaaccgaaggtgatgttatagatatgcaagcagaattggtcgatagatttggg
ccgataccattggctgctaaattgcttatacattcgcatagactgcgtatattagctgaa
aaactagcaataaaaaaagtggatgttagcgaggatattgccaccctgcactttgatata
agtcaggagataattgaccctgcgattattattgaattaattcaaaaaaacagaaagata
aaattgcaaggaccaactaagctacggattgaattcgaggataattttgagattgagaga
cggattcaaattgtacgtgatttaatacttcaccttacacctcaggaggttgtgtga
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