Terrabacter sp. C0L_2: U5C87_08885
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Entry
U5C87_08885 CDS
T09725
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ted
Terrabacter sp. C0L_2
Pathway
ted03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ted00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
U5C87_08885 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ted03400
]
U5C87_08885 (ligD)
Enzymes [BR:
ted01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
U5C87_08885 (ligD)
DNA repair and recombination proteins [BR:
ted03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
U5C87_08885 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WVM98466
LinkDB
All DBs
Position
1910348..1911232
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AA seq
294 aa
AA seq
DB search
MAYQPTKVTVEVDGRRMKLSSLEKVMYPRTGTTKAQVLDYYARIAPVILPHLRDRAVTRI
RFPHGVGDMQFFEKNIPAGTPAWIRRAGRDPVFPLIDDLAGLTYFANLNSLELHVHQWRY
AGEGRDAELLNPDRLVIDLDPGPGTGLHECARVALIVRERLSGIGLDTTPVTSGSKGLQL
YAVLPGAHTSDEIRDTVQQLAQELTKAHPDLVVWKMAKELRPGKIFLDWSQNVAAKTTVC
PYSLRGRERPTVAAPRSWDEIESGADGGVLEQLTADEVLERVARDGDLAESITG
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggcataccagcccacgaaggtcaccgtcgaggtcgacggccggcggatgaagctgtcc
agcctcgagaaggtgatgtacccgcggaccggcacgaccaaggcgcaggtgctcgactac
tacgcccgcatcgcgccggtcatcctgccgcacctgcgcgaccgtgccgtgacgcgaatc
cgcttcccgcacggtgtcggtgacatgcagttcttcgagaagaacatccccgcaggcacg
cccgcgtggatccgccgcgccggccgcgacccggtcttcccgctcatcgacgacctcgcg
ggactgacgtacttcgccaacctcaactccctcgagctgcacgtgcaccagtggcgctac
gcgggggaggggcgcgacgccgagctgctcaaccccgaccggctcgtcatcgacctcgac
cccggccccgggacgggactgcacgagtgcgcgcgcgtcgccctcatcgtgcgcgaacgg
ctcagtggcatcggcctcgacacgaccccggtgaccagtggcagcaagggactccagctg
tatgccgtcctgcccggcgcacacacgagcgacgagatccgcgacaccgtccagcagctc
gcgcaggagctgaccaaggcccaccccgacctcgtcgtgtggaagatggccaaggagctg
aggcccggcaagatcttcctcgactggagccagaacgtcgccgccaagacgacggtgtgt
ccgtactcgctgcgcgggcgagagcgaccgacggtcgcggcgccccggtcgtgggacgag
atcgagtcgggggccgacggcggtgtgctcgagcagctgacggccgacgaggtgctcgag
cgggtggcgcgcgacggcgacctcgccgagtcgatcactggctga
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