Terrabacter sp. C0L_2: U5C87_09970
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Entry
U5C87_09970 CDS
T09725
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ted
Terrabacter sp. C0L_2
Pathway
ted03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ted00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U5C87_09970 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ted03400
]
U5C87_09970 (mfd)
Enzymes [BR:
ted01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U5C87_09970 (mfd)
DNA repair and recombination proteins [BR:
ted03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
U5C87_09970 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Glyco_tran_WecG
AroM
MFD_D3
AAA_22
TP_methylase
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WVM98674
LinkDB
All DBs
Position
2148244..2151888
Genome browser
AA seq
1214 aa
AA seq
DB search
MPHPLLSAFRALPDVRHVLDQVGRARLVDVSASDGSRPFLVAALAQQAQAVGPDAASEPA
PVVVVTATTREAEDLASALSLFLAEERIAVFPSWETLPHERLSPRSDTVGRRLAVLRRVA
HPDPDDPAYGPLSVVVAPVRAVLQPLTKGLGDLVPVALRAGDERPLEDVVDALAAAAYTR
TDLVERRGEFAVRGGILDVFPPTEEHPVRIEFWGDTVEEVRWFKVADQRSLEIADHGLWA
PPCRELLLTDDVRARARALADQLPGVSEMLSKVAEGIAVEGMESLAPALVDGMESLLDVL
PPRSILLLADPERVRRRAHDLVATSEEFLEASWANAAAGNEVPVDLQSLLGSASYWSLAD
VRALAESSGRAWWTLTPFVADADLVIEDDDVDQRLAVRTTDPDAFRGDTDRAVAHLRERV
RDGWAVAVVTEGPGLAKRVAEVLREHEVPVGVLDTSRDDSLEAGTVHVTTAPLGRGFVHE
GARVEVLTETDLTGQPGSGTSTKDMRRMPSRRRNQVDPLQLRPGDHVVHEQHGVGRFVEM
MQRTVAGATREYLVIEYAPGKRGQPGDRLFVPTDQLDQVTKYVGGEEPTLNKMGGSDWTK
TKSRAKRYVKQIAADLIRLYSARQATKGHAFAPDTPWQRELEDAFGYVETPDQLISIDEV
KADMEKQVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVSQHQQTFAER
YAQFPVRVASLSRFQSDKEAKEVMAGMADGSIDLVIGTHRLLAKDAKFKDLGLVIIDEEQ
RFGVEHKELLKTMRTAVDVLSMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGA
YDEKQITAAVRRELLREGQVFFVHNKVNSIEKAAARLRELVPEARIATAHGQMGEHRLEQ
VVEDFWEKRFDVLVCTTIVETGLDISNANTLIVERSDVLGLSQLHQLRGRVGRGRERAYA
YFLYPPEKPMTETAHDRLRTIASNTDLGSGMAVAMKDLEIRGAGNLLGGEQSGHIQGVGF
DLYVRLIGEAVADFRGDSVDVPAEIKIELPVDAHLPHDYVPGERLRLEAYKKLATVETFE
AVDEIEAELRDRYGAPPKPVENLLEVARLRVVARAARIGDIGVQGKVVRFGPVKELRESQ
QLRLMRLYPGTLVKEALGTILVPAPMTARVGGKPLRDVEVLTWARQLIQAVLLDDIAAAS
SASSGAARSAVGAP
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgccgcacccactgctgtccgccttccgggcgctccccgatgtccgtcacgtcctcgac
caggtcgggagggcccgcctcgtcgacgtgtccgcgagcgacggctcgcgcccgttcctc
gtcgccgccctggcccagcaggcacaggccgtcggccccgacgccgcgtccgagccggcc
cccgtcgtcgtcgtcaccgcgacgacgcgtgaggccgaggacctcgcgagcgcgctgagc
ctgttcctggccgaggagcgcatcgccgtcttcccgtcctgggagacgctgccgcacgag
cggctctccccacgcagcgacaccgtgggtcggcgacttgccgtcctgcgaagggtcgct
caccccgacccggacgacccggcatacggccccctctcggtggtcgtggcgcccgtccgc
gccgtcctgcagccgctgaccaagggcctcggcgacctcgtgcccgtcgcgttgcgcgcg
ggcgacgaacgccccctcgaggacgtcgtcgacgcgctggctgcggccgcgtacacccgc
accgacctcgtcgagcggcgcggcgagttcgccgtgcggggaggcatcctcgacgtcttc
ccgcccaccgaggagcacccggtgcgcatcgagttctggggcgacaccgtcgaggaggtc
cgctggttcaaggtcgccgaccagcggtccctcgagatcgccgaccacggcctgtgggcg
ccaccgtgccgcgagctgctgctcaccgacgacgtgagggcccgggcccgtgccctcgcc
gaccagctgcccggcgtctccgagatgctctccaaggtcgccgagggcatcgccgtcgag
ggcatggagtccctcgcgccggcgctcgtggacggcatggagtcgctcctcgacgtcctg
ccgccgcgctccatcctcctgctcgccgaccccgagcgcgtccgtcgccgcgcccacgac
ctcgtcgccacgagcgaggagttcctcgaggcgagctgggccaacgccgccgccggcaac
gaggtccccgtcgacctgcagtccctgctcggcagcgcctcctactggtcgctcgccgac
gtgcgggccctcgccgagtcctccggtcgcgcctggtggacgctgacgcccttcgtggcc
gacgccgacctcgtcatcgaggacgacgacgtcgaccagcggctcgccgtgcgcaccacg
gaccccgacgccttccgcggcgacaccgaccgcgcggtcgcgcacctgcgcgagcgcgtc
cgcgacggctgggccgtcgccgtcgtcaccgaggggcccggcctcgccaagcgcgtcgcc
gaggtgctgcgcgagcacgaggtccccgtgggggtcctcgacacctcgcgcgacgactcc
ctcgaggccggcaccgtgcacgtcacgaccgccccgctggggcgcggcttcgtccacgag
ggcgcgcgcgtcgaggtgcttaccgagaccgacctgaccggccagcccggcagcggcacg
tccaccaaggacatgcggcgcatgccgtcacgccgccgcaaccaggtcgaccccctccag
ctgcggcccggcgaccacgtcgtccacgagcagcacggcgtcggccgcttcgtcgagatg
atgcagcgcaccgtcgccggcgccacccgcgagtacctcgtcatcgagtacgccccgggc
aagcgcggccaaccgggtgaccgtctgttcgtgcccaccgaccagctcgaccaggtgacc
aagtacgtcggcggcgaggagcccacgctcaacaagatgggcggctccgactggaccaag
acgaagtcgcgggccaagcgctacgtcaagcagatcgcggccgacctcatccgcctctac
agcgctcggcaggccaccaaggggcacgcgttcgcccccgacaccccgtggcagcgtgag
ctcgaggacgccttcggctacgtcgagacgcccgaccagctgatcagcatcgacgaggtc
aaggccgacatggagaagcaggtcccgatggaccggctcatctgcggcgacgtcggctac
ggcaagaccgagatcgcggtccgggcagccttcaaggccatccaggacggcaagcaggtc
gcggtgctcgtgccgacgaccctgctcgtcagccagcaccagcagacgttcgccgagcgc
tacgcgcagttcccggtcagggtcgcctccctctcgcgcttccagagcgacaaggaggcc
aaggaggtcatggcggggatggccgacggcagcatcgacctcgtcatcggcacccaccgg
ctgctcgccaaggacgcgaagttcaaggacctcgggctcgtcatcatcgacgaggagcag
cgcttcggcgtcgagcacaaggagctcctcaagacgatgcgcacggccgtcgacgtgctg
tcgatgtcggccacgccgatcccgcgcacgctcgagatggccgtcaccggcatccgcgag
atgtccactctcgcaacaccgcccgaggaacgtcacccggtcctcaccttcgtcggcgcc
tacgacgagaagcagatcacggccgcggtgcggcgtgagctgctccgcgaggggcaggtc
ttcttcgtccacaacaaggtgaacagcatcgagaaggccgcggcgcgcctgcgcgagctc
gtgcccgaggcccgcatcgccacggcgcacggccagatgggcgagcaccggctcgagcag
gtcgtcgaggacttctgggagaagcgcttcgacgtgctcgtctgcacgacgatcgtcgag
accgggctcgacatctccaacgccaacaccctcatcgtcgagcgctccgacgtcctcggc
ctgtcccaattgcaccagctgcgcggccgggtcggccgtgggcgggagcgggcctacgcc
tacttcctctacccgcccgagaagccgatgaccgagacggcgcacgaccgtctgcgcacc
atcgcgagcaacaccgacctcggctccggcatggccgtcgccatgaaggacctcgagatc
cgcggcgccggcaacctgctcggcggcgagcagtccggccacatccagggtgtcggcttc
gacctctacgtccggctcatcggcgaggccgtcgccgacttccgcggcgactccgtcgac
gtcccggccgagatcaagatcgagctgcccgtcgacgcccacctgccccacgactacgtg
ccgggggagcggctgcggctcgaggcgtacaagaagctcgcgaccgtcgagaccttcgag
gcggtcgacgagatcgaggccgagctgcgagaccgctacggcgccccgcccaagccggtc
gagaacctcctcgaggtcgcccggctccgggtcgtggcccgggccgcgcgcatcggcgac
atcggcgtccagggcaaggtcgtgcgcttcggcccggtcaaggagctgcgcgagagccag
cagctgcggctcatgcgcctctacccgggcacgctcgtcaaggaggcgctcggcacgatc
ctcgtgccggcgccgatgacggcccgcgtcggcggcaagccgctgcgcgacgtcgaggtg
ctgacgtgggcgcggcagctgatccaggcggtcctgctcgacgacatcgccgccgcatcg
tccgcatcgtcaggcgcggccaggtctgccgtgggagcaccgtag
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