Candidatus Tenderia electrophaga: Tel_10335
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Entry
Tel_10335 CDS
T04171
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tee
Candidatus Tenderia electrophaga
Pathway
tee03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tel_10335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tee03400
]
Tel_10335
Enzymes [BR:
tee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tel_10335
DNA repair and recombination proteins [BR:
tee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tel_10335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALP54828
UniProt:
A0A0S2TI44
LinkDB
All DBs
Position
2245744..2249202
Genome browser
AA seq
1152 aa
AA seq
DB search
MQAAQRRDPFTPYVPDKPGRRTLWARLYGSSFGMVLGQGARRHAGPMVVITADNLMAARL
EHELRFYLGDDEQVPVIPFPDWETLPYDVFSPHQDITSQRLEALYRLPTLDKGILIIPAS
TAMHRLAPRDYIEAHSLMLDVGETLDIEALRMRLERNGYSCVSQVMEHGEFAVRGALIDL
FPMGSKTPYRIDLFDNEIETIRSFDPETQLSRDNVDRVRLLPAREFPLTKEAITRFRQAY
RAEFEGDPARSAIYKDITEGIAPPGIEYYLPLFFEQTTTLFDYLPDNAVVVLEEGIEEAA
RTFWSEVEQRYDQRKHDPERPLPAPERVFVPPRELDRGMAHFPRIDCHHFEVEDGQGVHN
FASRTPPLLTVNARAPQPLAALETFLKEFKGRVLFAAETGGRREALLELLKRDDIHPRQY
PDWLSFLDDKARIGITIAPLEKGLLFDDIAVISEPQLFGEQAVQRRRRKVTKRDDDAVVR
SLTELMPGSPVVHEDHGVGRYLGLQSLELNGITTEFLTLEYAGGDKLYVPVSSLHLISRY
TGTSPDSAPLHKLGSEVWAKAKRKAAEKAHDVAVELLDIYARRAARQGYRYPEPDDQYRA
FATAFPFEETPDQEEAIHNVVKDMVSAQPMDRLVCGDVGFGKTEVAMRAAFLAVQGGKQV
AVLVPTTLLAQQHYQNFRDRFADWPIRIEVLSRFRSKKDQDAVLKDMADGKVDIIIGTHK
LLQAGVKFTELGLVILDEEHRFGVRQKERLKSLRAEVDVLTLTATPIPRTLNMALADMRD
LSIIATPPSKRLAIKTFIRQWDKNLVREACLREIKRGGQVYFLHNEVESIEKQARDLEAL
IPEARVTVAHGQMPERELEKVMLDFYHQRYNILVCTTIIETGIDVPTANTIVMNRADKLG
LAQLYQLRGRVGRSYHQAYAYLIVPPKRSMTADAVKRMEAIESLEGLGAGFTLASHDLEI
RGAGELLGEEQSGQIQEVGFSMYSELLDRAVKALKSGQVPNLDQPLDQHAEVDLRIPALI
PEDYLPDVHTRLVMYKRIANAADEEDLRELQVEMIDRFGLLPEQAKNLIRVTELKLKAEP
LGIKKIEAGPQGGRLMFSQKPNIDPMRIIDLIQHKSRIYKLDGQDKLRFTMPTETPEQRI
EVVEKVLHELSA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
ctgcaggccgcgcagcgacgcgaccccttcaccccctatgtgccggacaaacccggccgc
aggaccctctgggcgcgactctacggcagcagcttcggcatggtgctgggccagggcgcg
cgccgacacgccggccccatggtggtcatcaccgccgataacctgatggcggcgcggctg
gagcacgaactgcgcttctacctgggcgacgacgaacaggtgccggtgatccccttcccg
gactgggagaccctgccctacgacgtcttctcgccgcaccaggacatcacctcgcaacgg
ctggaggcgctctaccgcctgccgacgctggacaagggtatcctcatcatcccggcgtcg
acggccatgcaccgcctggcgccgcgcgactacatcgaggcccacagcctgatgctggac
gtgggcgagaccctggacatcgaggcgctgcgtatgcgcctggagcgcaacggctacagc
tgcgtctcccaggtgatggaacacggcgaattcgccgtgcgcggtgcgctcatcgatctc
tttcccatgggcagcaagacgccctaccgcatcgacctgttcgacaacgagatcgagacc
atccgcagcttcgaccccgagacccagctgtcgcgcgacaacgtggaccgcgtgcgcctg
ctgccggcgcgcgagtttcccctcaccaaggaggccatcacccgcttccgccaggcctac
cgcgccgaattcgagggcgacccggcccgttcggcgatctataaagacattaccgagggc
atcgccccgcccggcatcgaatactatctgccgctgttcttcgaacagaccactaccctg
ttcgactacctgcccgacaacgccgtggtcgtgctggaagaaggcatcgaagaggccgcc
cggaccttctggagcgaagtggaacagcgctacgaccagcgcaaacacgacccggagcgc
cccctgccggcgcccgagcgcgtcttcgtcccgccccgcgagctggaccggggcatggcg
cacttcccgcgcatcgactgccaccacttcgaagtggaggacggccagggcgtgcacaac
tttgccagccgcacgccgccattgctcaccgtcaatgcgcgcgccccacaacccctggcg
gcgctggaaacctttctcaaagagttcaagggccgcgtgctgttcgccgccgagaccggc
ggccgccgcgaggccctgttggaattgctcaaacgcgacgacatccacccgcgccaatac
ccggactggctcagcttcctcgatgataaggcgcgcatcggcatcaccatcgcgccgctg
gaaaaaggcctgttgttcgacgacatcgccgtcatcagcgaaccccagctgttcggcgaa
caggcggtacaacggcgccgccgcaaggtcaccaagcgcgacgacgatgcggtggtgcgc
agcctcaccgaactcatgcccggcagcccggtggtgcatgaagaccacggcgtgggccgt
tatctgggactacagagcctggaactgaacggcatcaccaccgaattcctgacgctggaa
tacgccggcggcgacaagctctacgtgccggtctcatccttgcatctgatcagccgctac
accggcacctcgcccgacagcgcgccgctgcacaagctgggttccgaggtgtgggccaag
gccaaacgcaaggctgcggaaaaggcccacgacgtggccgtcgagctgctggacatctac
gcccgccgcgccgcgcgccagggctatcgctatcccgaaccggacgaccagtaccgcgcc
ttcgccaccgcctttcccttcgaagagacgccggaccaggaagaggccatccacaatgtg
gtcaaggacatggtctcggctcagcccatggaccggctggtgtgcggcgacgtgggcttc
ggcaagaccgaagtggccatgcgcgccgccttcctcgccgtacagggcggcaagcaggtg
gcggtgctggtgcccaccaccctgctggcgcaacaacactatcagaactttcgcgaccgc
ttcgccgactggccgatacgcatcgaagtattgtcacgcttccgttccaagaaggaccag
gacgccgtcctgaaagacatggccgacggcaaggtggacatcatcatcggcacgcacaaa
ttgttgcaggccggcgttaaattcaccgaactcggtttagtcatcctggacgaggagcac
cgcttcggcgtgcgccagaaggaacggctcaagtccctgcgcgccgaggtggacgtgctc
accctcaccgccacccccattccgcgcacgctcaacatggcgttggcggacatgcgtgac
ctctccatcatcgccaccccaccctccaagcgactcgccatcaagaccttcatccgccag
tgggacaagaacctggtacgcgaggcctgcctgcgcgagatcaagcgcggcggccaggtc
tattttctccacaacgaagtggagagcatcgaaaaacaggcgcgcgacctggaagcgttg
atccccgaagcacgcgtcaccgtcgcccacggccagatgccggagcgcgaactggaaaag
gtgatgctcgacttctaccaccagcgctataacatcctggtctgcaccaccatcatcgag
accggcattgacgtgcccaccgccaacaccatcgtcatgaaccgcgccgacaagctgggc
ctggcccagctctatcagctgcgcgggcgcgtcgggcgttcctatcatcaggcctatgcc
tacctcatcgtgccgcccaagcgcagcatgaccgccgatgcggtcaagcgcatggaggcc
atcgaatccctggaaggcctgggggccggcttcaccctggccagccacgacctggagatc
cgcggcgccggcgaactgctgggcgaggaacagagcggccagattcaagaggtcggtttc
agcatgtattccgaactgctcgaccgcgccgtcaaggcgttgaaatccggccaggtgccc
aacctggatcagccgctggaccagcacgccgaggtcgacctgcgcatcccggccctcatc
cccgaggattatttaccggatgtccacacccgcctggtaatgtacaaacgcatcgccaac
gccgccgacgaagaggacctgcgcgaattgcaggtggagatgatcgaccgcttcggtctg
ctgccggaacaggccaagaacctcatccgcgtcaccgaactcaagctcaaggccgaaccg
ctgggcatcaaaaagatcgaagccgggccccagggcgggcggttgatgttcagtcaaaag
cccaacatcgatcccatgcgaatcatcgacctgatccagcacaagagccggatctacaag
ctggacggtcaggacaaactgcgatttactatgccaaccgagacgccggagcaacgtatc
gaggtggtggaaaaggtgctgcatgaactatcggcatag
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integrated database retrieval system
