Nostocoides sp. HKS02: GKE56_11260
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Entry
GKE56_11260 CDS
T06295
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
teh
Nostocoides sp. HKS02
Pathway
teh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
teh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GKE56_11260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
teh03400
]
GKE56_11260
Enzymes [BR:
teh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GKE56_11260
DNA repair and recombination proteins [BR:
teh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GKE56_11260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QGN58368
UniProt:
A0A6I5X6N6
LinkDB
All DBs
Position
2346595..2347533
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AA seq
312 aa
AA seq
DB search
MRPMLATRATAIPAGAEWIHEVKWDGMRVLADVRDGVLTLTSRTGNDVTASYPELAGLSG
LYDDMLLDGEVVALDGGRPSFGALADRMHVRDRRKAERLAATRPVTLMVFDLLRLYGADL
TTQPLSARREMLERLDLDGRHWQVPPVYDDGPELFAATLEQGLEGVVSKRLSSTYLPGRR
STDWLKSPHHTTISVVVGGWRAEKTNESGRLGAVLVGLPDGAGGWRYAGGLGSGIAGRAA
TQLAEALAPLRRQDSPFSTEVPRIDAVGVTWVEPTLVVEARALEVTRDGRLRQPAYLGIR
TDLTPRDLQDEP
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccatgctggccacccgagccactgccatcccggcaggggcggagtggatccat
gaggtgaagtgggacggcatgcgggtgctggcggacgtccgtgacggcgtgctcaccctg
acgtcccgcaccggcaacgacgtcacggcgtcctaccccgagctggccggcctgagcggc
ctctacgacgacatgctgctcgacggcgaggtggtcgccctcgacggcggccgcccgtcc
ttcggggcgctggcggaccggatgcacgtgcgtgaccgacgcaaggccgagcggctggcc
gccacccggccggtgacgctcatggtgttcgacctgctgcggctctacggcgcggacctc
accacccaaccactgtcggcccggcgcgagatgctcgagcgactcgacctcgacgggcgc
cactggcaggtgccaccggtctacgacgacggacccgagctgttcgccgcgaccctcgag
caaggcctcgagggagtggtgagcaagcggctctcgtcgacctacctgcccggacggcgt
tccaccgactggctgaagtcgccgcaccacaccacgatctcggtggtcgtcggcggctgg
cgcgcggagaagaccaacgagtccgggcggctcggcgcggtgctcgtcggcctgcccgac
ggcgctggcggctggcggtatgccggcgggctgggcagtgggatcgccgggcgcgccgcg
acccagctggccgaggcgctcgcaccgctgcgccgccaggactccccgttcagcaccgag
gtgccccgcatcgacgccgtcggcgtgacctgggtcgagcccaccctggtcgtcgaggcc
cgcgcgctcgaggtgacgcgcgacggccggctgcgccagccggcatacctcgggattcgc
accgacctcacgccccgcgacctgcaggacgagccgtga
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