Tessaracoccus palaemonis: KDB89_02985
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Entry
KDB89_02985 CDS
T08695
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tej
Tessaracoccus palaemonis
Pathway
tej03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KDB89_02985 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tej03400
]
KDB89_02985 (mfd)
Enzymes [BR:
tej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KDB89_02985 (mfd)
DNA repair and recombination proteins [BR:
tej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KDB89_02985 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QXT63460
LinkDB
All DBs
Position
700257..703763
Genome browser
AA seq
1168 aa
AA seq
DB search
MKYPGLLGELEADRGFAATIADSRRSGVTALDVTAVTSFFPLLSSAIAEGSGGTVLIVTS
TYREAEQLTAEVGALLGPDQVEYYPAWETLPHERLSPRADTVGRRLAVLRRLAGFDGDIP
RVVIAPVRSVLQPQVRGLADMVPVQIGVGDSYELSRLLNDLVGAAYNRVDLVERRGEFAV
RGGIVDIFPPTAEHPVRIEFFGDEVDEIRYFTVADQRSTGESATSIVAPPCRELLLTDAV
RGRARRLSAQHPELSDLLDRVAEGHAQEGMEALIPALVDGLELLVDVLPKGSIVLASQPE
LIRARAAELVATSQEFLEASWAAAAGGGTSPIDLGASAYWTLADVRMHALQIGLRWWSMS
PFAADDQGTYPSTGSGRVDSDSVHSRTLAVHPSEPFHGDVAVATQHVARRVKDGWRVVVA
VEGRGLAQRLIELLDEAGVRAAIGDLEQPPAPGSVTVVLATLRQGWRADEARIEVLTSAE
LTGQAAVDKVERKLPSRRKATIQPLELKAGDPVVHESHGVGRFVELVSRTIQCATRDYLV
IEYAPSKRGQPGDRLFVPMDQLDQLSRYVGSESPTLDKMGGADWTKRKAKARKAVREISG
ELIKLYAARQATKGHAFGPDTAWQRELEDAFSYVETPDQLSAITEVKADMEKLVPMDRLI
CGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVTQHYATFASRFAGFPVRVAQLSRF
QSDAEARKVVDGIATGKVDVVIGTHRLLGKEIQYKDLGLVIIDEEQRFGVDHKERLKSMR
VNVDVLSMSATPIPRTLEIAITGIREMSVIATPPEERHPVLTFAGPYDDAQVKAALRREL
AREGQAFFVHNRVGTIEKTAARLRELVPEARIATAHGQMSESRLEQVMQDFWERNTDVLV
CTTIVEAGLNIQSANTLIIDRADMMGLSQLHQLRGRVGRSRERGYAYFLYPADKPLSEAS
HERLATMAANTDLGAGMAIAMRDLELRGAGNLLGEDQSGHIEGVGFDMYLRMVGEAVANY
RGDAGEPEPTMRVEIPVDAHLPEDYITSERLRLEMYKQIAEIRTEADIEGVLAELVDRYG
EPPQAVVSLLGVARLRNLAREHGIQEIVPQGKVVRLAPLSLPESRQLRLGRLYPGSTVKS
AVDQILVPKPADGDYLGWATTLITQLFA
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgaagtacccgggactgctcggagaactcgaggccgaccgcggcttcgcggcgacgatc
gccgactccaggcgcagcggagtcaccgcactcgacgtgacggccgtcacgtccttcttc
ccgctgctcagctccgccatcgccgagggttccggtggcacggtcctgatcgtcacctcc
acctaccgcgaggcggagcagctgacggccgaagtcggcgcgctgctcggccccgaccag
gtcgagtactacccggcctgggagaccctgccccacgagcgcctgtccccgcgcgccgat
accgtcggccggcgccttgccgtgctgcgcaggctcgccggattcgacggcgacatcccc
cgggtcgtgatcgcgcccgtccgctcggtgctgcagccccaggtccgcggcctcgccgac
atggtccccgtccagatcggggtgggggacagctacgagctctcccggctgctgaacgac
ctcgtcggcgccgcctacaaccgcgtcgatctggtcgagcggcgcggcgagttcgccgtc
cgcggcggcatcgtcgacatcttcccgccgaccgccgagcaccccgtgcgcatcgagttc
ttcggcgacgaggtcgacgagatccgctacttcaccgtcgccgaccagcgctcgacgggg
gagtcggcgacgagcatcgtcgcgccgccgtgccgcgagctgctgctcacggatgccgtc
cgcggccgcgcccgcaggctctccgcccagcaccccgaactcagcgacctgctcgaccgc
gtcgccgagggacacgctcaggagggcatggaggccctgatccccgcgctggtcgacggc
ctcgagctgctcgtcgacgtgctgcccaaggggtcgatcgtgctcgcctcgcagccggag
ctcatccgcgcccgcgccgccgaactcgtcgcgaccagccaggagttcctcgaggcgagc
tgggccgcggcagccggcggtggcacctcgcccatcgacctgggcgcttcggcctactgg
accctggccgacgtgcgcatgcacgccctgcagatcgggctgcgctggtggtccatgtcg
cccttcgccgccgacgaccagggcacctacccttcgacaggctcaggacgtgttgactcc
gactccgtccactcccgtaccctcgcggtacacccgtccgagcccttccacggcgacgtc
gccgtcgcgacgcagcacgtcgcccgcagggtcaaggatggctggcgggtcgtggtcgcc
gtcgagggccgcggcctggcgcagcgcctcatcgaacttctcgacgaggcgggcgtccgg
gccgcgatcggcgatctcgagcagccaccggcccccggctccgtcaccgtcgtgctggcg
acgctgcggcagggctggcgcgccgatgaggcccgcatcgaggtcctcacctccgccgag
ctgaccggccaggcggccgtcgacaaggtcgaacgcaagctgcccagccgccgcaaggcc
accatccagccgctcgagctcaaggcgggcgaccccgtcgtgcacgagtcccacggcgtc
ggccggttcgtcgagctcgtcagccgcaccatccagtgcgccacccgcgactacctcgtc
atcgagtacgcgcccagcaagcgcggccaacccggcgaccggctcttcgtcccgatggac
cagctcgaccagctcagccgctacgtcggctccgagtccccgacgctcgacaagatgggc
ggcgccgactggaccaagcgcaaggcgaaggcccgcaaggccgtccgggagatctccggt
gagctcatcaagctctacgccgcccgtcaggcgaccaaggggcacgcgttcggccccgac
acggcctggcagcgggaactcgaggacgcgttcagctacgtcgagacccccgaccagctc
tccgccatcaccgaggtgaaggccgacatggagaagctcgtcccgatggaccgcctcatc
tgcggcgacgtcggctacggcaagaccgagatcgccgtgcgcgccgcgttcaaggccgtg
caggacggcaagcaggtcgccgtgctcgtgccgacgacgctgctcgtcacgcagcactac
gcgacgttcgcgtcgcgcttcgccgggttccccgtccgcgtcgcgcagctgtcgcgcttc
cagagcgacgccgaggcccgcaaggtcgtcgacggcatcgccaccggcaaggtcgacgtc
gtcatcggtacgcaccgcctgctgggcaaggagatccagtacaaggatctcgggctggtc
atcatcgacgaggagcagcgcttcggcgtcgaccacaaggaacgcctgaagtccatgcgg
gtcaacgtcgacgtgctgtcgatgtccgccacgccgatcccgcgcacgctcgagatcgcc
atcaccggcatccgggagatgagcgtcatcgcgacgccacccgaggagcgtcaccccgtc
ctgacgttcgccgggccctacgacgacgcgcaggtcaaggccgcgctgcgccgcgaactc
gcccgcgagggccaggcgttcttcgtgcacaaccgcgtcggcacgatcgagaagaccgcg
gcccggctgcgcgagctcgtccccgaggcccgcatcgcgacggcgcacgggcagatgagc
gagtcccgcctcgagcaggtcatgcaggacttctgggagcgcaacaccgacgtgctggtc
tgcaccaccatcgtcgaggcgggcctgaacatccagagcgccaacacgctgatcatcgac
cgcgccgacatgatgggcctgtcgcagctgcatcagctccgcggccgcgtcggccggtcc
cgcgagcgcggctacgcctacttcctgtacccggcggacaagccgctgtcggaggcctcc
cacgagcgcctcgcgaccatggcggcaaacacggacctcggcgccggcatggcgatcgcc
atgcgcgacctggagctccgcggcgccggcaacctcctgggcgaggaccagtccggccac
atcgagggcgtcggcttcgacatgtacctgcgcatggtcggcgaggccgtcgcgaactac
cgcggcgacgcgggcgagcccgagccgacgatgcgggtcgagatccccgtcgacgcacac
ctgccggaggactacatcacctcggagcggctgcgcctcgagatgtacaagcagatcgcc
gagatccgcaccgaggccgacatcgagggcgtgctggccgagctcgtggaccggtacggc
gagccgccccaggccgtggtgtcgctcctgggcgtcgcccggctgcggaacctggcccgc
gagcacggcatccaggagatcgtcccgcagggaaaggtcgtgcggctggcgccgctcagc
ctgccggagtcgcggcagctgcgcctggggcgcctgtacccgggctcgaccgtgaagtcc
gccgtcgaccagatcctcgtcccgaagcccgccgacggcgactacctcgggtgggcgacc
acgctcatcacgcagctcttcgcgtga
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