Tessaracoccus palaemonis: KDB89_07810
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Entry
KDB89_07810 CDS
T08695
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tej
Tessaracoccus palaemonis
Pathway
tej03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KDB89_07810 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tej03400
]
KDB89_07810 (ligD)
Enzymes [BR:
tej01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KDB89_07810 (ligD)
DNA repair and recombination proteins [BR:
tej03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KDB89_07810 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
GPP34
Motif
Other DBs
NCBI-ProteinID:
QXT61711
LinkDB
All DBs
Position
1724347..1725291
Genome browser
AA seq
314 aa
AA seq
DB search
MSGTITTSLDGVTLALTHPERPMFPDGFTKGELISYYVEVADVLLPHLAGRPITRVRFPQ
GTAGGSFYEKNVPAGAPTWVRTLPVATSSGPLPYVLAEDRPTLAWLGNLAAVELHTPQWR
AGDATLGPDGVVLDGADEPLTRTLMVDLDPGEGLTIADSATAAILAATTLADLGLEALVK
SSGNKGLQLSVPIAPTPCSEVHAWARTLAGLLARRHPKTFVATMAKAARAGLVYVDFGQN
LAARNTISPYSVRGVETPSVATPLTWDEVGGLTRRTQPLRITPAQVLDRVSRNGDLWQAA
LRGDASAPLPTLAT
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggaccatcacgaccagcctcgacggggtgacgctggccctgacccacccggaa
cgtccgatgttccccgatggcttcaccaagggcgagctcatctcctactacgtcgaggtc
gccgacgtcctgctcccgcacctggccgggcgtccgataacgcgcgtcaggttcccgcag
ggcaccgccggagggtcgttctacgagaagaacgtgccggccggcgcccccacctgggtc
cggacgctccccgtcgcaacgtcgtccggcccgctgccctatgtgctcgccgaggaccgc
ccgacgctggcctggctcggcaacctcgccgccgtcgagctgcacaccccgcagtggcgc
gcgggcgacgcgaccctcggccccgacggcgtcgtcctcgacggcgcagacgagcctctc
acgcgcaccctcatggtcgacctcgaccctggcgaggggctgacgatcgccgactctgcg
accgccgcgatcctcgccgccacgacgctggccgacctcgggctggaggccctggtgaag
tcatccgggaacaagggcctgcagctgagcgtgccgatcgcgcccaccccctgcagcgag
gtgcacgcgtgggcgcgcaccctggccgggctgctggcgcgtcggcatccgaagaccttc
gtcgcgaccatggcgaaggccgcccgcgccgggctggtgtatgtcgatttcggccagaac
ctggccgcgcgcaacacgatctccccgtactcggtgcggggcgtcgagaccccctccgtc
gcgacgccgctgacctgggacgaggtcggcggcctcacccgtcggacgcaaccactgagg
atcacccccgctcaggtgctcgaccgggtgtccaggaacggcgatctgtggcaggcagcg
ctacgcggtgacgcctcagctcccctgccaaccctcgcgacctga
DBGET
integrated database retrieval system
