Tessaracoccus aquimaris: BW730_11225
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Entry
BW730_11225 CDS
T04732
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tes
Tessaracoccus aquimaris
Pathway
tes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BW730_11225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tes03400
]
BW730_11225
Enzymes [BR:
tes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BW730_11225
DNA repair and recombination proteins [BR:
tes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BW730_11225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AQP47972
UniProt:
A0A1Q2CPE0
LinkDB
All DBs
Position
complement(2377209..2380709)
Genome browser
AA seq
1166 aa
AA seq
DB search
MKYPGLLSLLEADRGFAATIADSRRSGVTTLDVTAVPSFFPLLSSAIAEGSANTVLLVTS
TYREAEQYAAELGGLLGEDDVAYFPAWETLPHERLSPRADTVGRRLAVLRRLSGKDELPP
PRVVVAPIRSVLQPQVKGLADMAPVRIAVGETYELSQLLADLADAAYNRVDMVERRGEFA
VRGGIVDVFPPTAEHPVRVDFFGDEVDEIRFFTVADQRSTGETTTSMVCPPCRELLLTPQ
VRSRAKRLSQEHPELSDMLARIAEGQAVEGMEALTPALVDGLELLVDVLPKGSLVLAASP
ELIRARAAELVQTSQEFLEASWAAAAGGGTSPIDLGASAYWSLGDVRQHSLDKGHRWWSL
SPFAAHDDDGEAEQPNFDPDSVHSRILDVGPSETFRGDTEAATRHIAARIDAGWHVILVV
EGRGLAQRLIELLGEAGLSAHLDDLSEPPKRGRISIVLSSLRQGWRADEPKVEVITAAEL
TGQQALDRSERKLPSRRKATIQPLELKAGDPVVHEQHGVGRFVELVQRVVQGATRDYLVI
EYAPSKRGQPGDRLFVPMDQLDQLSRYVGSESPTLDKMGGADWTKRKAKARKAVREISAE
LIKLYAARQATKGYAFSPDTQWQRELEDAFNYVETPDQLSAITEVKGDMEQVVPMDRLIC
GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVTQHYQTFASRFAGFPVHLAQLSRFQ
SDAEAKKVVDGLATGKVDVVIGTHRLLSNGIQYKDLGLVIIDEEQRFGVDHKERLKSMRV
DVDVLSMSATPIPRTLEIAITGIREMSVIATPPEERHPVLTFAGPYDQAQVKAAIRRELA
REGQVFFLHNRVGTIEKTAATLRELVPEARVVTAHGQMSEKRLEQVMLDFGERRADVLVC
TTIVEAGLNIQTANTLIIDRADLLGLSQLHQLRGRVGRSRERGYAYFLYPPDKPLTEASH
ERLATMAANTDLGAGMAIAMRDLELRGAGNLLGEDQSGHIEGVGFDMYLRMVGEAVASYR
GVDTETEPTMRVEIPVDAHLPEDYIASERLRLEMYKQIAEIRNDADIEAVRGELVDRYGE
LPDPVEALLGVAHLRNLAREKGIQEIVPQGKVVRFSPMTLPESKQVRLQRLYPGATVKSA
LDQILVPKPDGDYLTWARTFLTQMYA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
gtgaagtatccagggctcctctcactgctcgaggcggaccgcggctttgccgcgacgatc
gccgactcgaggaggtcgggcgtcacgacgctcgacgtcaccgccgtgccctccttcttc
cccctgctcagctccgcgatcgccgaggggtctgccaacacggtgctcctcgtcacgtcg
acgtaccgggaggccgaacagtacgcggccgaactcggcgggctgctcggcgaggacgac
gtcgcctacttcccggcctgggagaccctgccgcatgagcgcctctcgccgcgcgccgac
accgtcggacgacgcctggcggtgttgcgccgactctccggcaaggacgaactcccgcct
ccgcgcgtggtggtcgcgccgatccgttctgtgttgcagccccaggtcaagggcctcgcc
gacatggcgcccgtccgcatcgcggtgggggagacctacgaactgagccaactcctcgcc
gatctggccgacgccgcctacaaccgcgtcgacatggtcgaacggcgcggcgagttcgcc
gtgcgcggcggcatcgtcgacgtgtttccgccaacagccgagcaccccgtccgcgtcgac
ttcttcggcgacgaggtggacgagatccgcttcttcaccgtcgccgaccagcgctcgaca
ggcgagacgacgacctccatggtctgccctccctgccgcgaactcctgctcacgccgcag
gtccgatcccgcgccaagcgactctcgcaagagcacccagagctgagcgacatgctcgcc
cggattgccgaggggcaggcggtcgagggcatggaggcgctcaccccggcgctggtcgac
ggcctcgaactgctcgtcgacgtgctgccgaaggggtcgctcgtgctggcggcctccccg
gagctgatccgggcccgcgccgcggaactcgtgcagaccagccaggagtttctcgaggcg
agttgggccgccgcggccggtgggggcacctctcccatcgacctcggggcatctgcctac
tggagcctcggcgacgtgcgccagcactccctcgacaagggccaccgctggtggtcgctt
tcaccgttcgcggcccacgacgacgacggcgaggcggagcagcccaacttcgaccccgac
tcggtccactcccggatcctcgacgtggggccgtccgagaccttccgcggcgacaccgag
gccgcgacccgccacatcgcggcgcgcatcgacgccggctggcacgtcatcctcgtggtc
gagggccgcggcctggcgcagcgcctgatcgaactgctcggagaggctggcctctctgcg
cacctcgacgacctgagcgagcccccgaagcgcggccggatctccatcgtgttgtcctcg
ctcaggcagggctggcgcgccgacgagccgaaggtcgaggtcatcaccgcggccgaactc
accggccagcaggccctcgaccgctccgagcgcaagctcccgtcgcgccgcaaggccacc
atccagccgctcgagctgaaggcgggcgaccccgtcgtgcacgaacagcacggcgtcgga
cgcttcgtcgaactggtgcagcgcgtcgtgcaaggcgccacccgcgactacctcgtcatc
gagtacgcgccctcgaagcgcggccaaccgggcgaccggctgttcgtgccgatggaccaa
ctcgaccagctcagccgctacgtcggctccgagtcgccgacgctcgacaagatgggcggc
gccgactggaccaagcgcaaggcgaaggcccgcaaggccgtccgggagatctccgccgag
ctgatcaagctctacgccgcccggcaggcgacgaagggctacgccttcagccccgacacg
cagtggcagcgcgaactcgaggacgcgttcaactacgtcgagacgcccgaccagttgtcg
gccatcaccgaggtcaagggcgacatggagcaggtcgtccccatggaccgcctgatctgc
ggcgacgtcggctacggcaagaccgagatcgcggtgcgcgccgcgttcaaggcggtccag
gacggcaagcaggtcgcggtgctcgtgccgacgacgctcctcgtcacacagcactaccag
accttcgcgtcccggttcgctggcttccccgtgcacctggcgcagttgtcccggttccag
agcgatgccgaggccaagaaggtcgtcgacggcctcgccacgggcaaggtcgacgtcgtg
atcggcacccatcggttgctcagcaacgggatccagtacaaggacctcgggttggtgatc
atcgacgaggagcagcgcttcggcgtcgaccacaaggagcggctcaagtcgatgcgcgtc
gacgtcgatgtgctgtcgatgtcggcgaccccgatcccgcgcaccctggagatcgccatc
accggcatccgggagatgagcgtcatcgcgaccccgccggaggagcgccacccggtcctc
acgttcgcgggcccgtacgaccaggcgcaggtcaaggccgccatccgccgcgagttggcc
cgcgagggtcaggtgttcttcctgcacaaccgggtcggcacgatcgagaagaccgccgcg
acgctgcgggaactggtgcctgaggcgagggtcgtgacggcgcacggccagatgagcgag
aagcggttggagcaggtgatgctcgacttcggcgagcgtcgcgccgacgtgctggtgtgc
accaccatcgtcgaggctggcctcaacatccagaccgccaacacgctcatcatcgaccgc
gccgacctgctcggcctctcccagttgcaccagttgcgcggccgagtgggtcgatcccgc
gagcgcggctacgcctacttcctgtatccgccggacaagccgctgacggaggcctcccac
gagcgactcgcgacgatggccgccaacaccgaccttggcgcaggcatggcgatcgcgatg
cgtgaccttgaactgcgcggcgcgggcaacctgctcggcgaggatcagtccggccacatc
gagggcgtcggcttcgacatgtacctgcggatggtcggcgaggctgttgccagctaccgc
ggcgtcgacaccgagaccgagccgacgatgcgggtcgagatccccgtcgacgcgcatctg
cccgaggactacatcgcctccgagcggctgcggttggagatgtacaagcagatcgccgag
atccgcaacgacgccgacatcgaggcggtccgcggcgaactcgtcgaccgctacggcgaa
ctgcccgaccctgtcgaggcgctcctcggggtcgcgcacctgcgcaacctggcccgcgag
aaggggatccaggagatcgtgccgcagggcaaggtcgtccggttctcgcccatgacgctg
cccgagtcgaagcaggtgcgactgcagcgcctgtaccccggcgcgaccgtcaagtcggcc
ctcgaccagatcctggtcccgaagcccgacggcgactacctcacctgggcgagaaccttc
ctcacgcagatgtacgcctga
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