Tetrahymena thermophila: TTHERM_00387050
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Entry
TTHERM_00387050 CDS
T01020
Name
(RefSeq) ATP-dependent DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tet
Tetrahymena thermophila
Pathway
tet03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TTHERM_00387050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tet03400
]
TTHERM_00387050
Enzymes [BR:
tet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TTHERM_00387050
DNA repair and recombination proteins [BR:
tet03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
TTHERM_00387050
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
BRCT_2
DNA_ligase_IV
LIG3_BRCT
BRCT
Motif
Other DBs
NCBI-GeneID:
7825974
NCBI-ProteinID:
XP_001019308
TGD:
TTHERM_00387050
UniProt:
Q23RI5
LinkDB
All DBs
AA seq
1026 aa
AA seq
DB search
MQNYYKWHKIKQEQNQELSVNIKPISSSKMKQSDISTRKKKAQEYNMDFDEFQQEDSKIN
QNSDNFHFGDSADEYGIDSPKMKREKAVKEEDNTFRLEIKKSPILEKTLFSFLVKFYNQV
QQSKKGQRKKFVQRFIDSTFKTNRCPSYTFTILRLIMPHHDKQRLNYGLNYKNLAKVLSE
VFALSEDKRQQLLNYKRPLKDNQQVVGDFGEVVQNVLQAFTQKATLTINDVDRCLDELAQ
PQNRDLASKEKVLRNCLKNATSEEIKWISRLILKDLNLGINHEIILALFHPDAVVLFNST
SSLWEVCKEFVDPNHKLSNVLRLFHPIKPMLAGRKTLKSIEAILKGKNYLVETKFDGERI
QCHVSPESLMFFTRNSNNYTNIYERMIEHVRRSLKDAVHSCILDGEMVVVNKITGQRVQF
GLNKTVAMEREDDELCICYKIFDILYLKTKDNKEYALTEYTLQYRKKILENLIDNQQDRV
EVIFGREYSDINDILTEFNEAIHRNDEGIVIKQLDTLYYPDDRSDKWIKMKGDYYEGIID
TLDLIVIGGYFGEKSYKINGIGDWTDHITHYLVAVAKKIDLQNPSNSILVPFAKVGAGFT
ARDYADIKARMRDQWVRTNHSNKTPSFIIQNWKPGEKDKPDAYILSPQNSLILEIRATEI
IQSSQYPTNYTLRFPRFEKFRRDKDWFDCMKFNEIIEMTQNLKKKEQKESDKEDNASDEE
QDENGGKLKKKRKGQNGEEIEVNRQGRKPNWKTNKVMAQYLDIDVSDVKVESNIFNNFVF
NIINLPHEVSLSEEKILLEKAQIEKGIVANGGKKVQNDSNLVTHYIASHYDFKVQVIGDH
YKVNVLSLQWVKDCIKKKTLLDYSPRYIIYGQDQLLERNKLLYDQYGDSYYKDVDEDELL
DILKSMKIDQIEEEFQENEEFEEAVKDIISMKNQLFKECFPQGQTYCFYNANDKLNSDID
LRYLVDLIQFSGNQVVFDLQDEIDYIVALDYSEAENEKIITFREKNRSMEVITPKNLLNN
FGIALE
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaactattataaatggcataagataaaataagaataaaatcaagaattgtctgtt
aatataaagccaatttcttcatcaaagatgaaacaaagtgatatttctactaggaagaaa
aaagcttaagagtataatatggattttgatgaattttagcaagaggattctaaaattaac
taaaattctgataattttcactttggtgattcagcagatgaatatggtattgattcacca
aaaatgaaaagagaaaaagcagttaaagaagaagataatacctttcgcttagaaattaaa
aaatctcctatcctagagaaaacactcttttcatttttagtcaaattttataattaagtc
tagcaatctaaaaaagggcaaagaaaaaaatttgtataaagattcattgactctacattt
aaaacaaatagatgtccatcttacacatttactatccttaggttaataatgcctcatcat
gataaataacgtcttaattatggcttaaactataaaaatttagctaaagttttaagcgaa
gtgtttgccttatcagaagataaacgtcaatagcttttgaattataaaagacctttaaaa
gacaactagcaagtagttggtgattttggtgaagttgtataaaatgttttgtaagcattt
acttagaaagccacactaacaatcaacgatgtggatagatgtcttgatgagcttgcataa
cctcaaaatagagatctagcatccaaagaaaaagttttaagaaactgcttgaagaatgca
acatcagaagaaataaaatggatttcacgtttgatcttaaaggaccttaatcttggtatt
aatcacgaaataatacttgcactttttcatcctgatgcagtagtattatttaattctact
tctagtctttgggaggtttgcaaggaatttgtagatccaaatcataaattatctaatgtc
cttaggctatttcatcctataaaacctatgcttgcaggacgtaagactctcaaaagtatt
gaagctattcttaaaggtaaaaactatttagttgaaacaaaatttgatggggagagaatt
tagtgtcatgtatctcctgaatctttaatgtttttcactagaaactcaaacaattataca
aatatttatgaaagaatgatagagcatgttagaagaagtttaaaagatgctgttcatagt
tgtattttagatggagaaatggttgtagtaaataaaataacaggataaagagtttaattt
ggtcttaataaaactgttgcaatggaaagagaggatgatgaattatgtatatgttataaa
atttttgacattttatatttgaagactaaagataataaagaatatgcactgacagaatac
acattgcaatatagaaaaaaaattttagaaaatttaattgacaatcaataagacagagtt
gaagttatttttggtagagaatactcagatataaatgacatactgactgaatttaatgag
gcaatacatagaaacgatgaaggtatagtcataaagcagctcgatactctgtattaccca
gatgatagatctgataagtggattaaaatgaaaggtgactactatgaaggaataatagat
accttagatttgatagttattggaggatattttggtgaaaagtcttataaaattaatggc
ataggagattggacagatcatatcacacattatcttgttgctgtagcgaaaaagattgat
ctacaaaacccctctaactctatacttgtgccttttgctaaagtgggagcaggttttaca
gctagagactatgctgatataaaagctagaatgagagatcaatgggtaagaactaatcat
tcaaataaaacgccttctttcatcatataaaactggaaacctggagaaaaagataagcca
gatgcatatattttatctcctcaaaactctcttattttagagattagggcaactgaaatt
atataatcttcttaatatccgaccaactacaccttaagatttccgagatttgaaaaattt
agaagagataaagattggtttgattgcatgaaatttaatgaaattatagaaatgacttaa
aatttaaagaaaaaagaataaaaagagagtgacaaagaagataatgcaagcgatgaagag
taggacgaaaatggaggaaaattaaagaaaaaaagaaaagggtaaaatggagaagagata
gaagtaaatagacaaggtagaaagccaaactggaagaccaataaagttatggctcaatat
cttgatattgatgtttctgatgtcaaagtagaatcaaatatatttaataactttgtattt
aatataattaatttacctcatgaagtatccttgagtgaggaaaagatattgttagagaaa
gcctagattgaaaaaggtatagttgctaatggtggtaaaaaagtataaaatgatagcaat
cttgtaactcattacatagcttcacattatgattttaaagtttaagtaattggtgatcac
tataaagtaaatgttctatccttataatgggtaaaagactgtatcaaaaaaaaaacttta
ttagattactctccccgctacattatatatggttaagattaattgcttgagagaaataaa
ttgctttatgattaatatggagattcttattacaaagatgttgatgaagatgagttattg
gatattttaaaatctatgaaaattgattaaatagaagaagaattctaggagaatgaagag
tttgaagaggctgttaaagatattatttccatgaaaaaccaacttttcaaagaatgtttt
ccgtaaggataaacttattgcttttataatgcaaatgataaattgaattcagatatagac
ttaagatatttagttgatctaatttaatttagtggaaattaagttgtatttgacttatag
gacgaaattgattacatagtggctttagattatagtgaagctgaaaacgaaaaaattatt
accttcagagaaaaaaacagaagtatggaagttataactcctaaaaacttgttgaataat
tttggaatagctctagaatga
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