Tetrahymena thermophila: TTHERM_00420420
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Entry
TTHERM_00420420 CDS
T01020
Name
(RefSeq) DEAD/DEAH-box helicase
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tet
Tetrahymena thermophila
Pathway
tet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TTHERM_00420420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tet03041
]
TTHERM_00420420
Enzymes [BR:
tet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TTHERM_00420420
Spliceosome [BR:
tet03041
]
Complex A
U2 snRNP components
U2 related factors
TTHERM_00420420
Complex B
TTHERM_00420420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
7827260
NCBI-ProteinID:
XP_001033297
TGD:
TTHERM_00420420
UniProt:
I7M078
LinkDB
All DBs
AA seq
1166 aa
AA seq
DB search
MMMSLKMMKMINLFNQIKIFKPKETNINSQVIQPIQDQQNDSPRIQLEQDPIMIQIQQQI
EAQAKKQSNQSQNKQNLESPSQPSIENEANRELVENQNEFEEEMILEKDTSKFNKQKNNY
VEDYLNENSDSEDNMYGEEFFQNDAKEEEEEVGNQIQNDSDDLKFDNSDEEVNNLRQNGS
LNGNTKFYSEKLQKLQMMNQQQNDAADDDDVFLSFNKQQNLNQANSQKSNGNLNTNQSTL
SANNNSTIKIQTLDTSQSSMNKSNFTNNKTINQQQLVEEEQEQESDESDLDLYMKQLEEE
ENAAKGIQTSQKNSSSQNNTKPKQTYITMEDIFGKKKFKEDIEEEENEEGQSNNEDFGNQ
DSKNKVYFNGDSTFNQQKIQEEEEEGDQDEDDEEQDKFYQAFKEQLLKTKQEKLKDNKGA
LMMDEEQEKEEEREAFFDPENGESKEDYMERLKKEAQKKELKPIDYNEDELEHFQKNFYI
ESKEISQMTEDEVKIYRENLGEIQVKGQEVPRPIKSWLQSGLSDRILEVLIEKKKYDKPF
PIQCQSLPVIMSGRDMIGIAETGSGKTLAYLLPMIRHVSAQRPLQEGDGPIGLILVPTRE
LATQIYLEAKPFLKAYKYEIVAVFGGTGIKGQLSELKRGCEIVVATPGRLIDVLTTSNGK
ITNLKRITMVVIDEADRMFDLGFEPQIAKILATTRPDKQTVLFSATFPKNVENLAKKLMR
HKPVEVVVGARGQACTNITQLIEIRDESTRLFRLLELLGIYTEQGQVIIFVDKQIEVDFL
YQELRSRYYIPTILHAGVDAEDRVNNLLDFRKGIYKILIATSLSSRGLDVKNVVLVVNYK
CPNHIEDYIHRIGRTGRAGNKGTAVTFIGPEEDKYSLDLIKALKRSDQKVPEELLRMGEE
FKKKVKMGEAKIYNNANMQGKGFNFDEEERDKMNQMKYEQKKFLALQMGLDIEERDDDFV
FKKAQEESAKDKKDKDELTFQQKLHIVKTQDEYKDIREELFSKASEIANQKKLLGCGDDE
IKKAIEDVFKKGLENFIPSTKNIDQGKIKIAKMLQEFEKSNDIANNICFEEIEINDYPEN
ARKAVTKRDFQDRIYLQTGCLVVQKGIYVEIGKKVQPGFQKLYLRIEGDSEYQVRMAYRD
IKAELEEKSIKIHERGGAQQGRFTIP
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgagtctgaagatgatgaaaatgattaacctatttaatcaaataaaaattttt
aagcctaaagaaacaaatattaattcgcaagtaatatagccaatttaagattaataaaat
gattctcccagaatttaattagaataggatccaattatgatttaaatttagcaataaata
gaagcttaggctaagaaataaagtaactaaagctaaaacaaataaaatttagaaagccca
agttaaccttcgatagaaaatgaagcaaatagagagctagttgaaaactaaaatgaattt
gaagaggaaatgattttagaaaaagatacttccaaatttaacaaatagaaaaataattat
gttgaggattacttaaatgaaaattctgatagtgaggataatatgtatggtgaagaattt
ttttaaaatgatgcaaaagaagaagaagaagaagttggtaattaaatttaaaatgactct
gatgatctcaaatttgataatagtgatgaagaagtaaataatctaagataaaatggaagt
ttgaatggaaatactaaattttattctgaaaaattataaaaattataaatgatgaatcag
caataaaatgatgcagcagatgacgatgatgtttttttaagttttaataaataataaaat
ttaaatcaagctaatagccagaaatcaaatggtaacttaaatactaattaaagtacctta
agtgccaacaataacagcacaattaaaatatagactcttgatacctcataatcaagtatg
aataaatctaatttcacaaacaacaaaacaatcaattaatagtagttagttgaagaagaa
taagaataagaatcagatgaaagtgatctagatttgtatatgaaatagcttgaagaagaa
gaaaatgccgctaaaggaatatagacatcataaaaaaatagctctagctaaaataatact
aagccaaagcaaacttacattaccatggaagatattttcggtaaaaagaaattcaaagaa
gatattgaagaagaagaaaatgaagaaggatagtctaataatgaagattttggaaattag
gacagcaaaaataaagtttattttaacggagactctacttttaattagcaaaaaatttaa
gaagaagaggaagagggagattaggatgaggatgatgaggaataagataaattttactaa
gctttcaaggaataattgcttaaaacaaagcaagaaaagctcaaagataataaaggagcc
ttaatgatggatgaagaataagagaaagaagaggagagagaggccttttttgatccagaa
aacggtgagagcaaagaagactacatggaaagacttaaaaaggaagcttaaaaaaaggaa
ttaaagcctattgattataatgaagatgaattagaacatttctagaagaatttttatatt
gaaagcaaagaaatttctcagatgactgaggatgaagtaaaaatttatagagaaaactta
ggtgagatccaagttaaaggataagaagttcctcgtcctataaaatcatggctttaatct
ggtttaagtgatagaatattagaagttctaattgaaaagaaaaagtatgataaacctttt
cctatttaatgctaaagtctacctgtaattatgagtggaagagatatgataggtattgca
gaaacaggtagtggtaaaacactcgcctatttacttcctatgattcgtcacgtatctgcc
caaagacctctataagaaggtgatggacctatagggttaattcttgttccaacaagagag
ttagctacttagatatatcttgaagctaaacctttcttaaaagcttataaatatgagata
gttgctgtttttggaggaactggcattaaaggataactttctgaattaaaaagaggttgt
gaaatcgtagttgctactcctggtagacttatagatgtactcactacttcaaatggcaaa
ataactaacttgaaaagaataacaatggtagtcattgatgaggcagatagaatgtttgat
ttaggttttgaaccttaaattgcaaagattctagcaacaactcgtcctgataagtaaact
gtgctattttctgcaactttcccaaaaaatgtagagaatttagccaaaaaattaatgaga
cacaagccagtagaagttgttgtaggtgcaagaggataggcttgcacaaatattacttaa
ttaatagaaataagagatgaatctacacgtttgtttagattattagaactattaggtatt
tatactgaatagggttaagttataattttcgttgataaataaatcgaagttgattttttg
tatcaagaattacgttctagatattacattcctacaattttgcatgcaggtgttgatgct
gaagatagagtgaataatttacttgatttcagaaaaggaatttacaaaatacttatagca
acctctttaagtagcagagggttggatgtaaaaaatgtagttttggtagtaaactacaaa
tgtcctaaccatatagaagattacatccatagaattggaagaactggtagagcaggaaat
aagggtactgctgtaactttcataggtcctgaggaggacaaatatagcttagatcttatt
aaggctttaaagagaagtgaccaaaaagttcctgaggagcttttgagaatgggagaggaa
tttaagaaaaaagtgaaaatgggtgaggctaagatttataataatgcaaatatgtaaggt
aaaggctttaattttgatgaagaagaaagagataaaatgaattagatgaagtatgaataa
aagaaattcttagcactctaaatgggtctcgatatagaagaaagagatgacgattttgtt
tttaagaaagcttaagaagaaagtgcaaaagataaaaaggataaggatgaattaaccttc
taacaaaagcttcatattgtaaaaactcaagatgagtataaagatattagggaagaacta
ttttctaaagcaagtgaaattgcaaattagaaaaagcttctaggatgcggcgatgatgaa
attaaaaaggcaatagaagatgttttcaaaaaaggtttagaaaatttcataccaagtact
aagaatatagattaaggtaagatcaaaattgcaaaaatgctttaagaattcgaaaagtct
aatgatattgccaataatatttgttttgaagagatcgaaattaacgattacccagaaaat
gcaagaaaagctgtaactaaaagagatttccaagatagaatctatctccaaacaggctgc
cttgtcgtttaaaagggtatttatgttgaaataggcaagaaagtttaaccaggtttctag
aaactatatttaagaattgaaggagattccgaatactaagtacgtatggcttatagggat
atcaaagcagagttagaagaaaaatctatcaaaatacacgaaagaggaggtgcacagcaa
ggaagattcacaatcccatga
DBGET
integrated database retrieval system
