Tessaracoccus sp. T2.5-30: BKM78_04760
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Entry
BKM78_04760 CDS
T04747
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tez
Tessaracoccus sp. T2.5-30
Pathway
tez03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BKM78_04760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tez03400
]
BKM78_04760
Enzymes [BR:
tez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKM78_04760
DNA repair and recombination proteins [BR:
tez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BKM78_04760
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
Glyco_tran_WecG
UB2H
Motif
Other DBs
NCBI-ProteinID:
AQX15316
UniProt:
A0A807N3C6
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All DBs
Position
complement(993946..997428)
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AA seq
1160 aa
AA seq
DB search
MLFPGLLTALERDHAVAATLADSRRSGVTTLDVTAVPAFFPVLTAAIAEESGRTVLLVTS
TYREAEQVTAELGGLLGEDAVAYYPAWETLPHERLSPRADTVGRRLSVLRRLTGHAELPV
PRVVVAPIRSVLQPQVKGLADMAPVRIAVGEEYPLSTLLADLSGAAYTRVDLVERRGEFA
VRGGIVDIFPPTEEHPVRVDFFGDEVEEIRSFTVADQRSTGDTLPEMVAPPCRELLLTTP
VRERARALAAQHPELGDMLGRIAEGHAVEGMEALTPVLVDGLELLVDVLPAGSLILASSP
ELIRARAIELVQTSQEFLEASWAAAAGGGTSPIDLGASAYWSLADVRQHALAVGHRWWSL
SPFAADDEQTIDADSVHSRSVKVGAVESFRGDTEAAARHIAERRAAGWGVVLSVEGRGLA
QRMVELLDEAGVPAGIDDLTEPPGPDRVTVVVATLTHGWRADEAKVELITSTELTGQTVT
DRSERKLPSRRKATIQPLELKAGDAIVHEQHGVGRFVELVQRVVQGATRDYLVVEYAPSK
RGQPGDRLYVPMDQLDQLSRYVGSEAPALDKMGGADWTKRKAKARKAVREISAELIKLYA
ARQATRGHAFGPDNVWQRELEDAFSFVETPDQLSAITEVKSDMEKIVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVSQHYQTFASRFAGFPVHLAQLSRFQSDAESK
KILDGLATGRIDVVIGTHRLLSKEVQFKDLGLVVIDEEQRFGVEHKERLKAMRVNVDVLS
MSATPIPRTLEIAITGIREMSVIATPPEERHPVLTFAGPYDDAQVKAAIRRELAREGQVF
FVHNRVGTIEKTAAHLRELVPEARIVTAHGQMSETRLEQVMLDFWERRADVLVSTTIVEA
GLNIQSANTLIIDRADTLGLSQLHQLRGRVGRSRERGYAYFLYPPDKPLTEASHERLATM
AANTDLGSGMAIAMRDLELRGAGNLLGEDQSGHIEGVGFDMYLRMVGEAVASYRGDDVEP
EPQMRIELPIDAHLPEDYIESERLRLEMYKQIAEIRTEADIEAVRAELADRYGEPPAPVV
ALLGVARLRMLAREHGVQEIVPQGKVVRFAPVTLPDSRQVRLRRLYPGATLKPGAEQLLV
PKPDGDHLAWATTLLTQLYG
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
gtgttgttccccggactgctgaccgcactcgagcgcgaccacgccgtcgccgcgacgctg
gccgattcccgccgctcgggcgtcacgacgctcgacgtcaccgccgtccccgcgttcttc
ccggtgctgacggcggccatcgcggaggaatcgggccgcacggtgctgctggtcacctcc
acctaccgcgaggcggagcaggtgacggcggagctgggcgggttgctcggcgaggacgcc
gtggcctactacccggcctgggagaccctgccccacgagcggctgtcgccccgcgccgac
accgtgggccgccggctgtccgtgctgcgccgcctcaccggacacgccgagctcccggtg
ccgcgcgtcgtggtggcacccatccgctccgtgctgcagccgcaggtcaaggggttggcg
gacatggcccccgtgcggatcgccgtgggggaggagtaccccctgtccacgctgctcgcg
gacctctccggcgccgcctacacgcgcgtcgatctcgtggaacggcgcggcgagttcgcg
gtgcgtggcggcatcgtcgacatcttcccgcccaccgaggaacacccggtgcgcgtggac
ttcttcggcgacgaggtggaggagatccggtcgttcaccgtcgccgaccagcgctccacg
ggcgacacgctgcccgagatggtggccccgccgtgccgggagctcctgctcaccaccccg
gtccgcgagcgcgcccgggcgctggccgcccagcaccccgaactgggggacatgctcggc
cgcatcgccgagggtcacgccgtcgagggcatggaggcgctcacgcccgtgctggtcgac
ggcctcgagctgctcgtcgacgtgctgccggccgggtcgctgatcctcgcgtcgtcgccg
gagctcatccgcgcccgcgcgatcgagctggtccagacgagccaggagttcctggaggcc
agctgggccgcggcggccggcgggggcacctcgccgatcgacctcggcgcgtccgcctac
tggagcctcgccgacgtccgtcagcacgcgctggccgtcggccaccgctggtggtcgctg
tctccgttcgcggcagacgacgagcagaccatcgacgcggactccgtgcactcccgctcg
gtcaaggtgggggccgtcgagtccttccgcggtgacacggaggccgcagcccggcacatc
gccgaacgccgcgcggccggctggggcgtggtgctcagcgtcgagggacgcggcctggcg
cagcgcatggtcgagctgctcgacgaggcgggcgtccccgccggcatcgacgacctcacc
gagccaccgggtccggaccgggtgacggtcgtcgtcgcgacgctcacgcacggctggcgg
gccgatgaggccaaggtcgagctcatcacgtcgacggagctcaccggacagacggtcacc
gaccgctccgaacggaagctccccagccgccgcaaggccaccatccagccgctcgaactc
aaggccggcgacgcgatcgtccacgaacagcacggcgtcgggcggttcgtggagctggtg
cagcgcgtggtgcagggcgccacccgcgactacctcgtcgtggagtacgcgcccagcaag
cgcggacaacccggggaccggctgtacgtgccgatggaccaactcgaccagctcagccgc
tacgtggggtcggaggcgccggcgctcgacaagatgggcggcgccgactggaccaagcgg
aaggccaaggcccgcaaggccgtccgggagatctcggccgagctcatcaagctctacgcg
gcccggcaggccacccgagggcacgccttcgggccggacaacgtgtggcagcgcgagctg
gaggacgccttcagcttcgtggagacgccggaccagctgtcggccatcaccgaggtgaag
tccgacatggagaagatcgtgccgatggaccggctgatctgcggcgacgtcggctacggc
aagacggagatcgccgtgcgggccgccttcaaggccgtgcaggacggcaaacaggtggcg
gtgctggtgcccaccacgctgctggtgtcgcagcactaccagaccttcgcgtcgcggttc
gccggcttcccggtccacctcgcgcagctgtcgcggttccagtccgacgccgagtccaag
aagatcctcgacggcctggccaccggccgcatcgacgtcgtcatcggcacgcaccgcctc
ctgagcaaggaggtccagttcaaggacctggggctggtcgtcatcgacgaggagcagcgg
ttcggcgtcgaacacaaggagcgcctgaaggccatgcgggtcaacgtcgacgtcctgtcg
atgtccgcgaccccgatcccccgcacgctcgagatcgccatcaccggcatccgcgagatg
agcgtcatcgccacgcctccggaggagcggcaccccgtcctcacgttcgccgggccctac
gacgacgcgcaggtcaaggcagccatccggcgcgagctggcgcgcgagggtcaggtgttc
ttcgtccacaaccgcgtcggcacgatcgagaagacggccgcgcacctgcgcgaactcgtg
cccgaggcgcgcatcgtcaccgcgcacggccagatgagcgagacgcgcctggagcaggtc
atgctcgacttctgggagcgccgggccgacgtcctggtcagcaccaccatcgtcgaggcg
ggcctcaacatccagagcgccaacactctcatcatcgaccgcgccgacaccctcggactg
tcccaactgcaccagctgcggggccgcgtcggcaggtcccgcgagcgcggctacgcctac
ttcctgtatccgccggacaagccgctgacggaggcgtcgcacgaacgcctcgctacgatg
gccgccaacacggacctcggctccggcatggccatcgccatgcgggacctcgagttgcgc
ggcgccggcaacctgctcggcgaggaccagtccgggcacatcgagggcgtcggcttcgac
atgtacctgcgcatggtgggggaggccgtcgccagctaccgcggcgacgacgtcgagccc
gagccgcagatgcgcatcgagctgcccatcgacgcccacctcccggaggactacatcgag
tccgagcgcctgcgcctggagatgtacaagcagatcgcggagatccgcacggaggccgac
atcgaggccgtccgggccgagctggcggaccgctacggggagccgccggcccccgtcgtc
gccctgctcggggtggcgcggctgcggatgctggcccgcgaacacggcgtccaggagatc
gtcccccagggcaaggtggtgcggttcgcgccggtcacgctgcccgattcccggcaggtg
cggctacggcggctctacccgggcgccaccctcaagccgggcgccgagcaactgctggtg
cccaagcccgacggggaccacctcgcctgggccacgacgctgctgacccagctgtacggc
tga
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