Tachysurus fulvidraco (yellow catfish): 113635040
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Entry
113635040 CDS
T08119
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03013
Nucleocytoplasmic transport
tfd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113635040 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
113635040 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113635040 (thoc1)
03041 Spliceosome [BR:
tfd03041
]
113635040 (thoc1)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
113635040 (thoc1)
Spliceosome [BR:
tfd03041
]
Complex C
Other components
EJC/TREX
113635040 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113635040 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Stonustoxin_helical
Motif
Other DBs
NCBI-GeneID:
113635040
NCBI-ProteinID:
XP_047678557
LinkDB
All DBs
Position
1:complement(48700462..48707981)
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AA seq
650 aa
AA seq
DB search
MAPAVLNLIEARDKFTAATRHALETRTCKPLTSAFNHFSGNEAEKKSTLDLSLRGVLEEQ
IVKHADVEDHLALISISISGVTEGICSASTPFLLLGDVLDCLPLVQCDQIFSFVEENVST
WKSSSFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENITVFNKNEQESTLGQQSSDVKEDGMEEGEMGEEDTPAPCSIPIDYNLYRKFWMLQDY
FRNPVQCYDKFSWITFIKYSDETLAVFKSFKLDDTQASRRKREEMHTAGGEHVYFAKFLT
SEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNCSLSDDQTSWMEETTKLVYQL
LRETPPDGEMFATMVEHILNTEENWNAWKNEGCPSFVKERPTETKPQRPSRKRAAPEDFL
GKGPERKILMGNDELTRLWNLNPDNMEACKSDSREFMPSLEDFFEEAIEQADPANMVEDQ
YKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFKSLEDYLENMVIKLAKELPKDLPSEEIK
TGEEEDESGDNLLKESNDSPSIQSKLVTNSQMDEIAKKLGAQWKSLAPHLDVKEVEIREI
EADSDDVELQAKMMLVSWQDREDAQATMESLVTALNTAGFASIAQGFSET
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctgctgtgttaaatttaatagaagcgagagataaattcacggctgccaccaga
cacgcgctggagactcggacctgcaaaccgctgacgagcgcttttaaccatttctctgga
aatgaggcagagaagaagagcactctggacctgtccctgcgtggcgtcctggaggaacag
atcgtgaagcacgccgatgtggaggatcatctcgctctcatttccatcagcatcagcggc
gtcactgagggtatctgctcagccagcactccgtttttgttgctgggtgacgttctcgac
tgtctccctctggttcagtgtgaccagatcttctcgtttgttgaggagaacgtctccact
tggaaatctagctccttctactcagcagggaagaactacttgttaaggatgtgcaacgat
ctccttcgcagactgtccaaatcccagaatacggtgttctgtgggaggatccagcttttc
ctcgctcgtctcttccctctgtctgagaaatcaggtctgaaccttcagagtcagtttaac
ctggagaacatcacagtgtttaacaagaacgaacaggagagcacactcggacagcagagc
tctgatgttaaagaggacgggatggaagaaggagaaatgggtgaagaagacacacctgct
ccatgctccattccaatagactacaacctgtacaggaagttctggatgctgcaggattac
ttcaggaacccggtgcagtgctacgacaagttctcctggatcaccttcatcaagtactcg
gacgagacgttggcggtgtttaagagcttcaagctggacgacactcaggcctccaggagg
aagcgggaggagatgcatacagccggaggggaacatgtttatttcgcaaagttcctgacc
agtgagaagctaatggatctgcagcttagtgacagtaacttcagacgtcacatcctgctg
cagtacctcatcctcttccagtacctcaaaggtcaggtcaagttcaaaagctccaattgt
agtcttagtgatgatcagacatcctggatggaggagactacaaagcttgtatatcagtta
ctcagagaaactcctccagacggtgagatgtttgctactatggtggagcacattctaaac
acagaggaaaactggaacgcctggaagaatgagggatgtccaagttttgtcaaagaaaga
cccacagagaccaaaccacagcggcccagcaggaaacgagcagcacccgaggacttcctg
ggtaaaggaccagagcgtaagatcctgatgggcaatgatgaactgacacgactgtggaac
ctcaatcctgacaacatggaggcgtgtaaatctgacagcagggagtttatgccgtccctg
gaggacttttttgaggaggccatcgagcaggcagacccagccaacatggtggaggatcag
tacaaggtggtgaggaactcaaattacggctggcgagctctccgtcttctctcacgccgc
agtccacacttcttccagcccacaaatcagcagttcaagagtctggaggattatctagag
aacatggtgatcaaactggccaaggaacttcctaaggatctcccgtctgaggagataaag
acaggagaggaggaggacgagagcggagacaatctgctgaaggagagcaatgacagtccg
agtattcagagcaaactggttactaacagtcagatggacgaaatcgccaagaagctcggg
gctcagtggaagtcgctcgctcctcacctggatgtgaaggaggtggagattcgcgagatc
gaagcggacagtgacgacgttgagcttcaggccaaaatgatgctggtgtcctggcaggac
cgggaggatgcccaggccaccatggagagcctggtcacggcgctgaacaccgctggcttc
gctagcatcgcgcagggcttcagcgagacatga
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