Tachysurus fulvidraco (yellow catfish): 113636085
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Entry
113636085 CDS
T08119
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03013
Nucleocytoplasmic transport
tfd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113636085 (upf3b)
03015 mRNA surveillance pathway
113636085 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113636085 (upf3b)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113636085 (upf3b)
mRNA cycle factors
P-body specific factors
113636085 (upf3b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
113636085
NCBI-ProteinID:
XP_026991787
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All DBs
Position
17:12477638..12483615
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AA seq
455 aa
AA seq
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MKEDKENTRPKERKVEIKCEENERTERPNKEKKEAMTKIVIRRLPPSLTKEELEEQLQPL
PEVDYLEFFSSDTSLYPHLFARAYLNFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFA
PFQKIAKKRNKKRDSKSGTIEEDTDYKRFLEIYNGDEEKFTSTTETLLEEIEAKTKELVA
KKTTPLLDFLKNKQRLREEKKEERRRRELERKRVRDEERRKWREEDRRKRKEAEKLKKAE
KAPDKDKDQAKEEQPKIKLLKKLEKQENTDNEKPKEKPKKPEREKLKDDRAPGGVNEKKR
QNGEHREDKPRKYEEDGRREHRDREVDRERDRDRERRQKERERIKRQDEERRKRREHHDG
ENVYRKRDREDENKKEKEYVWEKRKNENTGESTQSDKFSKDAKKDENLKKDRLRNKDRPA
IQLYQPGARSRHRGSEAGEKKPDRDAKNIQEKGEE
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagacaaagaaaatacgcgacccaaagagaggaaagtggagatcaaatgtgaa
gaaaacgaaagaacggagaggccaaataaggagaagaaggaggccatgacaaagattgtg
atccgccgcctcccaccaagtctaactaaagaagagctggaggagcagctacagcctctg
cccgaggtggattatctcgagttcttctccagtgacaccagtctctaccctcatctcttt
gcaagagcatatctaaatttcaagaaccaggaggacattgtacttttcagagaccgtttt
gatggttatgtgttcattgataatcgaggacaagaatatcctgcgattgttgagtttgca
ccattccagaagattgctaaaaagaggaataagaaaagagattccaaaagtggaacaatt
gaagaagatactgattataaaaggtttttggagatctacaatggtgatgaggagaagttt
acatcaacaactgagacattattagaagaaatagaggctaagacgaaggagctagttgcc
aagaaaacaactcctctcttggacttccttaagaataagcagagattaagagaggaaaaa
aaagaggagaggaggaggagggagctggagcgcaaacgcgtgcgggatgaagagcggcgg
aagtggagagaagaggacagaaggaagcgcaaagaagctgagaaattaaagaaagcagaa
aaggcgcctgataaggacaaggaccaagctaaggaggagcagccaaaaatcaagctcctg
aagaaactagagaagcaagagaatactgacaacgaaaagcccaaagagaaacccaagaag
ccagagcgggagaaactgaaggatgaccgagctccaggaggagtaaatgaaaagaaacgt
caaaatggcgaacacagagaggacaagccaagaaaatatgaggaagatggacgcagggag
catcgggatcgtgaagtcgacagagaaagagatcgggatcgagagcgacggcagaaagag
agagaaagaatcaagaggcaggatgaggagcggcggaagagaagggagcaccacgatgga
gaaaatgtctacagaaaaagagaccgagaggacgagaacaaaaaggaaaaggagtatgta
tgggaaaagagaaagaatgagaatacgggcgaatccactcaatctgacaaattttctaaa
gatgctaaaaaggatgaaaatctgaaaaaggatcgtttaaggaacaaggatcgccctgcc
atccagctataccagccaggagcaaggagccgccacagaggatcagaggctggcgagaag
aagccagatagggatgccaaaaatatacaagagaaaggggaagagtga
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