Tachysurus fulvidraco (yellow catfish): 113638634
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Entry
113638634 CDS
T08119
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113638634 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfd03041
]
113638634 (ddx46)
Enzymes [BR:
tfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113638634 (ddx46)
Spliceosome [BR:
tfd03041
]
Complex A
U2 snRNP components
U2 related factors
113638634 (ddx46)
Complex B
113638634 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
113638634
NCBI-ProteinID:
XP_026995786
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All DBs
Position
21:complement(9630804..9642619)
Genome browser
AA seq
1031 aa
AA seq
DB search
MGRESRHYRKRSSSRGRSGSRSKSRSPDSKRVKKEERTRERGRRERSRSRERRRSRSRDR
KRPRRSRSRERKRSRSRDRSRRSRSRSKGRSKEKLDGGEQSADKKKKEEKEEERVEDQDF
DQTTLEEEMRKRKERVEKWREEQRKKAMENIGEIKKELEEMKQGKKWSLEDDDDDDEEGP
ASMDQEGDEDEDKEKEGKVEEAELNEEEGGEELDPLDAYMEEVKEEVKKFNMGTMKGGND
KKGGMTVTKVVTVVKTKKTPHTTKKKGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQR
KILEPVDHQKIQYETYRKNFYVEVPELARMTPEEVIEYRLELEGIIVKGKGCPKPIKTWV
QCGTSMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIL
DQRPLEEGEGPIAVIMTPTRELALQITKECKKFSKPLGLRVVCVYGGTGISEQIAELKRG
AEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVVDEADRMFDMGFEPQVMRIMDNVRPDRQ
TVMFSATFPRVMEALARRILNKPVEVQVGGRSVVCSDVEQHVIVIEEAKKFLKLLEILGH
YQEKGTVIIFVDKQEHADSLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKSGACRLMVA
TSVAARGLDVKHLILVVNYNCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGEII
KALELSGSPVPSELEQLWATFKEQQKAEGKSIKSSSGFSGKGFKFDETEHALANERKKLQ
KAALGLHDSDDEDTALDIDEQIESMFNSKKRVKDLAAPGGAAPSASGLTVTATGLGGLAV
PSAGNIQKLEIAKKLALKINAQKNLGAEAQDVMQQATNAIMRGGTMIAPSISAKTIAEQL
AEKINAKLNYTPIEKLEEERQSAEQSESVKRYEEELEINDFPQTARWKVTSKEALQRIGE
YSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSY
QPTAKGRYKVL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtctcgacattaccggaagcgctcatcatcacgaggacgttcaggcagt
cgctccaaaagccgctctcctgattctaagcgtgtgaagaaagaggagcgaacacgtgaa
cggggccgtagagagcgatcacggagcagggaaaggaggagatcacgctccagagaccgc
aagagaccaaggcgatctcgcagtcgagagcgtaaacgctccagaagtcgtgatcgttcg
aggagatcgaggagtcgcagcaagggacgaagcaaggagaagttggatggcggcgagcag
tcagcagataagaagaagaaagaagaaaaggaggaggagcgagtggaggatcaggacttt
gatcagacaacactggaggaggagatgaggaagaggaaggagcgggtggaaaaatggagg
gaagagcagaggaagaaggccatggagaacattggcgagatcaagaaggaactggaagag
atgaaacaggggaagaagtggagcttggaggatgatgatgatgatgatgaagagggtcca
gcatcaatggatcaagagggggatgaggacgaggataaggagaaggagggaaaggttgag
gaagcggaactaaatgaagaagagggaggggaagaacttgatcccctggatgcctacatg
gaagaagtgaaggaggaagtgaaaaagttcaacatgggcaccatgaaaggcggaaatgac
aaaaaaggaggcatgactgtgacaaaagtggtgacggtggtgaagacgaagaagacacct
cacaccaccaaaaagaaaggagagttaatggagaacgatcaggatgctatggagtattcc
tcagaggaggaggaagtggacctgcagacagctctcactggcttccagactaaacagcga
aaaattctggagcctgtagatcatcagaaaattcagtatgagacataccgcaagaatttc
tacgtggaagttcctgagctggccagaatgacaccagaagaggtaattgaatatcgtctg
gagcttgaaggaatcatagtcaaggggaaaggctgtcccaaacccattaagacctgggtg
cagtgtggaacctccatgaaggtcttaaatgcacttaaaaagcataactacgagaagcct
acgcccatccaggctcaggccattccagccatcatgtcaggacgagacctcattggcatt
gccaaaacaggaagtgggaagaccattgcattcctgcttcccatgtttcggcatatttta
gaccagcgacccctagaggagggggaggggccgattgcggtgatcatgacaccgacacgt
gagctcgctctgcaaatcactaaagagtgtaaaaagttctccaagccactggggctcaga
gtggtgtgtgtgtacgggggaacaggcatcagcgagcagatagcagagctgaagcgtgga
gctgaaatcatagtgtgcactcctggtcgaatgattgacatgttgggagccaacagtgga
cgagtcacgaacctgcgcagagtcacatatgtcgtagtagacgaagccgatcgaatgttt
gacatgggcttcgaaccgcaggtaatgcgcataatggataacgtgaggccggatcgtcag
acggtgatgttttcagcaacattcccccgagtgatggaggctttagctcgccgcatcctc
aacaaaccagttgaggttcaggttggggggaggagcgtggtgtgttcagatgtggagcag
catgtgattgtgattgaggaggcgaagaagttcctgaagctgttggagattttaggccat
tatcaggagaaaggcacagtgattatttttgtagataaacaggaacatgctgacagcttg
ttgaaagacctgatgaaggcctcgtacccctgcatgtctctgcatggaggaattgaccag
tatgatcgcgatagcattataaatgattttaagagcggtgcgtgtcggctgatggtggcc
acatcggtagcagcaagaggccttgatgtaaagcacctcattttggtggtgaactacaac
tgtcctaatcattatgaggactatgttcaccgtgctgggaggaccggaagagctggaaat
aagggctttgcatatacatttatcacagaggatcaggcacgttatgcaggtgaaatcatt
aaagctctggagttgtcagggtctccagttccttctgagcttgagcagctttgggctaca
tttaaggagcagcagaaagcggaggggaagagtattaagagcagcagtggattttcaggg
aaaggctttaaatttgatgagactgagcatgctttggcaaacgagaggaagaaactacag
aaagcggcgcttggacttcacgactccgatgatgaagacacagcactggatatagatgag
cagattgaaagcatgtttaactctaagaagcgtgttaaggatctggcggctccagggggt
gccgcaccgtcggcttcaggtctcaccgttactgcgacaggactcggtggtcttgctgtc
ccttcagctggaaacattcagaaacttgagattgccaagaaattggcactgaagatcaat
gcacagaaaaaccttggtgcagaagctcaggatgtaatgcagcaggctactaatgccatc
atgaggggtggcacaatgatcgccccctctatctctgctaagaccattgccgagcagctt
gctgagaaaattaatgccaagctgaactatactcccatcgagaaactggaggaggagaga
cagagtgcagaacagtcagagagtgtcaagaggtatgaagaggagctggagatcaacgac
tttccccagacggcgaggtggaaggtgacgtctaaagaggctctgcaaaggattggtgaa
tattcagaggctgcgatcaccatcaggggtacatacttccctcctggcaaagaacccaaa
gagggagaacgcaagatttatcttgccatcgagagtgcaaatgagttggcggtgcagaaa
gcaaaagcagagatcacacggctcatcaaagaagagctcatacgcttgcaaaactcatac
caaccgacagccaaaggccgatacaaagtgctgtag
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