Tachysurus fulvidraco (yellow catfish): 113644812
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Entry
113644812 CDS
T08119
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113644812 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113644812 (ddx61)
03036 Chromosome and associated proteins [BR:
tfd03036
]
113644812 (ddx61)
Enzymes [BR:
tfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113644812 (ddx61)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113644812 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
113644812 (ddx61)
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Gene silencing
piRNA pathway
113644812 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
113644812
NCBI-ProteinID:
XP_027005728
LinkDB
All DBs
Position
3:complement(17024208..17032214)
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AA seq
471 aa
AA seq
DB search
MATARTQIPTSVMGVTKQNGQAGTQTATVLSASQKGSSIPHTSGGIRFGDDWKKSLQLPE
KDTRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARA
KNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQVSQICINMSRHMGGVKVMATT
GGTNLKDDIMRLDEMVHVVIATPGRLLDLMKKGVAKTGKVQMMVMDEADKLLSQDFVTLI
EEIIGFTDKNRQILLYSATFPTTVQKFMSKHLKKPYEINLMDELTLKGITQYYAYVTERQ
KVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRNRVFHDF
RNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITS
EDRFNLKAIEDQLVTDIKPIPGSIDKSLYVAEFHSINHEEEEEKDAALSAS
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggccactgcaaggacccagatccccacatcggtcatgggagtcaccaaacaaaatggg
caggcagggacacagacagcaacagtgctcagtgcctcccagaaaggaagcagcatacca
cacaccagtggtggtatcagatttggagatgactggaagaagtccctgcagctcccagaa
aaagatacgagagtgaaaacctcagatgtgactgcaaccaaagggaatgagtttgaagac
tattgccttaaacgtgaattgttaatgggcatttttgaaatgggttgggagaagccatct
cctattcaggaggaaagcattcccattgccctgtcaggaagggacattcttgcacgggcc
aaaaatggcacagggaagagcggagcctacctcatccctctcctggagaggattgaccta
aaaaaggatcatattcaagccatagtaatggtgccaactcgtgaactggctctgcaggtg
agccaaatctgtattaacatgagtaggcacatggggggagtgaaggtcatggccactact
ggtggaaccaatctaaaggacgatatcatgcgcctggatgagatggtacatgtggtgatt
gccacaccaggcaggctgctggaccttatgaagaaaggtgtggccaaaacgggcaaagtc
caaatgatggtgatggatgaggcagacaaattgctctctcaagactttgtcaccctcatt
gaggaaattattggatttacggacaagaatcgtcagattctactttattctgccaccttc
cccactactgtacaaaaattcatgtcaaaacacctaaaaaagccctatgagattaacctg
atggatgagttgacactcaagggcattactcagtactatgcttatgtaacagagagacag
aaagtgcactgcctcaacacacttttctccaggctccagatcaaccagtctataatcttt
tgtaactcaacccagagggtggaacttttggctaagaagatcacacaattgggctactct
tgtttttacatccatgcaaaaatgatgcaggaatacagaaatcgcgtgttccatgacttc
agaaacggcctctgtagaaacctggtttgcacagatctttttacaagaggaattgacatt
caggctgtcaatgtggtcatcaactttgactttcccaaaaatgcagagacctacctacac
cgcattggaagatcaggtcggtttgggcacctgggtctggccattaatctgattacttca
gaggatcgtttcaatctgaaggccattgaggaccagctagtgacagacattaagcccatt
cccgggagcattgacaagagcctgtatgtggcagagttccactccatcaaccacgaggaa
gaggaagagaaggacgctgcactcagtgcatcttaa
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