Tachysurus fulvidraco (yellow catfish): 113648973
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Entry
113648973 CDS
T08119
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
113648973 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113648973 (lig4)
Enzymes [BR:
tfd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113648973 (lig4)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
113648973 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
113648973
NCBI-ProteinID:
XP_027012326
LinkDB
All DBs
Position
18:complement(8642375..8645866)
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AA seq
918 aa
AA seq
DB search
MEGLSKGQRTEETPKSDAASKTSVAAQVPFLDLCTVLENIQKAKARPDKSKCLKDFIDSW
RRFHAALHKDNPSTTDSFYPAIRLIVPSYERERMAYGIKENMLAKLYIEVLGLPKSGPEA
NKLLNYRAPTTSKGESGDFALTAYFVLKKRCTSKGNLSIKEVNDFLDSVAMNNTSKQKDL
VKKSLLHLITQSSALEQKWLIRMILKDMKLGISKETVLQVFHSDAPELYNVTTDLARVCR
QLHDPSVSLNEVSVSLFSAFRPMLAAVANIRQVEKQMGNHIFYIETKLDGERIQLHKDGD
VYKYYSRNSFDYTQQFGSSPLEGSLTPYIHNVFKSHVINCILDGEMMAYNPTTETFMQKG
SKFDVKRLVDDSDLQACFCVFDVLLVNDQKFGNEPLVKRYDTLQTVFTPIKGRIQLVQYT
EAKTRQEVINALNEAIDDREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLI
VGGYWGKGRRSGMLSHFLCAVAETPSPGEKPTVFHTLCRVGSGYTMKELYELGLKLAKHW
KVYRKSSPPAGILCGTEKPEVYIEPRNSVIIQVKAAEIVTSDMYKTNCTLRFPRIERIRE
DKEWYECMTLDELSQFRDKASGKLASRHLYFQEDELQKKKRKLTSKPKKTIDIVGHFKSQ
DLTTVTKETDMFEDVEFCVMSGSSMHSKAELEKAVARCGGIVVQNPGKDTYCVIAGIENV
RVKNLIGSNQHDIVWASWLLECLDRKQVLPWQPQHMIHMSPSTKEHFAKEYDCYGDSYYV
DTDEKQLRDVFSRMGPVEVGAVSIASIEQNYGLDDLPTSMFRPYRAYFDACAVIGNPETL
IMNTCLDFRALEFRFHGGIVAEKLEEGISHVVVEGDGRLLELKTHRRLFTKKFKIIQETW
VSDSIKAGHVLNDNDYLV
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggagggtttatccaaaggtcagagaacagaggaaacgcccaaaagtgatgctgcatct
aaaacatctgttgctgcacaagtgccatttcttgacctgtgcactgttcttgagaatatc
cagaaagccaaagctcgaccagacaagtccaaatgtttaaaagatttcatagattcatgg
agaaggtttcatgcagctctacacaaagataatcccagcactacagattcattttacccg
gccattcgtcttattgttccttcttacgaaagggagagaatggcctatggtatcaaagaa
aacatgttagccaagctctacattgaggtcttgggtcttccaaaatctgggccagaggcc
aataaacttctcaattacagagcccctactacatccaaaggagaatctggagactttgcc
cttacagcttactttgtcctcaaaaagagatgcacaagtaagggtaatctaagtatcaaa
gaggtcaatgacttcttggattcagtagctatgaataatacgagcaaacagaaagacctt
gtgaagaaaagccttttacatttgattactcaaagctcagcactggaacagaagtggctt
attcgtatgatcctgaaagacatgaaacttgggattagcaaggaaactgttctccaggtt
tttcactcagatgctccagagctctacaatgtcactacagacttggccagggtgtgcaga
cagctacatgacccctctgtttccttgaacgaggtatccgtcagtctgttttctgcattc
agacccatgcttgcggctgttgccaacatccgccaagtggagaaacagatggggaaccat
attttctatattgagaccaagctggacggtgagcggattcaacttcataaggatggggat
gtatacaagtactacagtcgtaactcgtttgattacacacaacagtttgggtcttcacca
ctagagggttccctaacaccgtatatccacaatgtctttaaatcccatgttatcaattgc
atcttggatggagagatgatggcttataaccccaccactgagaccttcatgcaaaaaggc
agcaaatttgatgtcaagcgcttggtggatgactctgatttgcaggcatgcttttgtgtg
tttgacgtcctgcttgttaatgaccagaagtttggaaatgagcctctcgtgaagcgttat
gacactctccagacagtcttcacacccatcaaaggccggatccagctggtacagtacact
gaagccaaaaccagacaggaagtaataaatgccctcaacgaagctattgacgaccgtgaa
gaaggcatcatggtcaaagaccccatgtccatttataagccagataaacgtggcgaaggc
tggctgaagatcaaacctgaatatgttgatggcttgatggatgaattggatctgctaata
gtgggaggctactggggaaaaggcagacggagcggaatgttgtcccactttctctgtgct
gttgctgaaactccaagtcctggagagaagccaacagtgttccatacactctgtcgagtt
ggatcaggctacaccatgaaggagctctatgaacttggcttgaaattggccaaacactgg
aaagtttatcgcaagagtagccctccggctggcattttatgtggaacagagaagccagag
gtttacatcgagccaagaaactctgtgatcattcaagtcaaagcggcagagattgttacc
agtgacatgtacaaaaccaactgcactctgcgcttccccaggatcgagaggatccgagag
gacaaagaatggtatgagtgcatgaccttggatgagctaagtcagtttcgtgataaagcc
tctggcaagctggcatccaggcacctttacttccaagaagacgagctgcaaaagaagaaa
cgcaaactcacatccaagcccaaaaagaccattgacatagttggccacttcaaatcccaa
gacctgacgacagtcactaaagagaccgacatgttcgaagatgtggaattctgtgtgatg
agtggaagcagcatgcattccaaagccgagcttgagaaggctgtggcccgttgtggaggc
atcgtagtgcagaaccctggaaaggacacgtactgcgtgattgcaggcattgaaaatgtg
cgggtgaagaaccttatcggttcaaaccaacatgacatagtatgggcatcctggctcctg
gaatgtctggacaggaaacaggtgctaccatggcaaccacaacacatgatccacatgtca
ccttcaacaaaggaacactttgcaaaagagtatgattgctatggtgacagttactacgtc
gacaccgatgagaagcagctgagggatgtctttagcaggatggggccggttgaggtgggc
gcagtatccatagcttcaatagagcagaactatggcttggatgacctgcccactagcatg
ttcagaccttaccgtgcctacttcgatgcatgtgctgtaatcggaaatccagaaactctt
attatgaatacgtgtctggactttcgtgctctggagtttcgctttcatgggggcatcgta
gcagaaaaactagaagaaggcatctcacatgtggttgtggagggagatggtagattgttg
gagctaaagacacacagacgcctctttactaagaagtttaagatcattcaagaaacatgg
gtgtccgattctattaaagcaggtcacgtacttaatgacaacgattaccttgtataa
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