Tachysurus fulvidraco (yellow catfish): 113650722
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Entry
113650722 CDS
T08119
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03250
Viral life cycle - HIV-1
tfd04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
113650722 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
113650722 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113650722 (samhd1)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
113650722 (samhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_2
HD
SAM_1
PDEase_I
Motif
Other DBs
NCBI-GeneID:
113650722
NCBI-ProteinID:
XP_027015003
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All DBs
Position
23:19270668..19284800
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AA seq
652 aa
AA seq
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MCQRRWKEDAAQRRLILKSCQAEKTRIMDSRKRPREEPRIVELLKTPEKRNKEGNYKDWD
TEETCSYLHQHGLGEWEQKFREQKITGLGLRYLTELQLEKMGIEPMGSRLQILHYLSKLW
QISSECMKVFNDPIHGHIELHPLLVRIIDTPQFQRLRHIKQLGATYMVFPGAAHNRFEHC
IGVGHLAGCLAQALNERQPELLISKQDILCVQIAGLCHDLGHGPFSHMFDGLFIPTVRPG
LKWKHESASVQMFDHLVKVNNLEGVMEEYGLSLPIDLIFIKEQIAGPLDSVSSANKWAYK
GRSEEKAFLYEIVANKRTGIDVDKWDYFARDCYHLGIQNNSDYRRFLKFARVCDVKGKKH
ICTRDKEVGDLYDMFHTRNCLHRRAYQHKVGNVIEVMITEALVKADPYIKIRGSSGKTYR
ISEAIEDMEAYTKLTDHIFEQILYSSDPVLSEAQAILQNILCRRLYKCVGQTTPDAHYDV
SQDMLLTWAREVSECKPDGIAVDLMPEDFVVNVICMDYGMKEKNPVNNVYFYCKKDPTKA
IKIRKNQVSKLLPERFAEQLIRVYCKKTDERNLEAAKKYFVQWCMNRNFSKPQDGDVTAP
ELTPLKRDWQNEGDDDSDSDNDSDNDTRARRMLNHGKLVKTNLFQLPQDKTS
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcagcggcggtggaaggaagacgcagctcagcggcggttaatccttaaatcttgt
caggcggagaaaacacgtatcatggacagccgaaagcgcccgagagaagagccgcggatt
gtggagctgctaaaaaccccagagaaaaggaataaagaagggaattacaaggactgggac
accgaggaaacctgctcctatcttcaccagcatggactcggagaatgggaacaaaagttc
agagaacagaagattacaggattggggctacgctatcttactgaactccagctggaaaag
atgggcattgagcctatgggctccaggctgcagatccttcactatctcagcaaactctgg
cagatctcatctgagtgcatgaaggtctttaacgatcccattcatggccacatcgagctc
catcccctgctggtgcgcatcatcgacacccctcagttccagaggctacggcacatcaag
cagctgggagccacatacatggtgtttcctggagctgcacacaaccgctttgaacactgc
ataggtgttggacatttagcaggttgtctggcacaagctctgaacgagagacagcctgag
ctcctcatctccaaacaggacatcctgtgtgttcagatcgccggcttgtgccatgacctg
ggtcacggtcctttttcccacatgttcgatggattgtttattcccacggttcgacccgga
ctgaaatggaagcacgagagcgcgtcggtccagatgtttgaccacctggtgaaagtgaat
aatctggaaggagtgatggaggagtacggactctctctacccatcgacctgatcttcatt
aaagagcagatcgctgggccgctggactccgtttcctcggccaacaagtgggcgtacaaa
ggcagatcggaagagaaagccttcctgtacgagatcgtcgccaataagaggaccggcatc
gacgtggacaagtgggattattttgcgagagactgctatcacctgggcatccagaacaac
tccgactaccgtcgcttcctcaagttcgctcgagtgtgtgacgtgaagggcaagaaacac
atctgcaccagagacaaggaagtaggcgatttatacgacatgtttcacacacgtaactgc
ctgcatcgccgagcgtaccaacacaaagtgggcaacgtcatcgaggtcatgattacagaa
gctctggtgaaagccgatccgtacatcaaaatccggggctcttcaggaaagacgtacaga
atctcagaagccatcgaggacatggaggcttacactaaactcacagatcacatattcgaa
cagatcctgtactcgtctgatccagtgctatctgaagctcaggccatcctgcagaacatc
ctctgtagaaggctgtacaaatgcgtgggccagacgacacccgacgctcactatgacgtg
tcacaggacatgttactcacatgggctcgtgaggtgtctgagtgtaaacctgacggcatt
gcggtggatctcatgcccgaggactttgtagtcaacgtgatctgtatggattacggaatg
aaggagaagaaccccgtgaacaacgtttacttctactgcaagaaagaccccactaaagcc
atcaagatccgcaagaaccaggtgtccaagttactgcccgagcgatttgcagagcagctg
atcagagtttactgcaaaaaaacagacgagaggaatctggaagcggcaaagaaatatttt
gtgcagtggtgtatgaacagaaacttctccaaaccacaggacggcgatgtcacggcccca
gagctcacaccactaaagcgtgactggcagaatgaaggcgatgacgactccgacagcgac
aacgacagcgacaacgacaccagagctcgaaggatgctcaaccatggaaaactcgtaaaa
acaaatctgtttcaattgccacaagacaaaacaagctaa
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